Computational Study on Temperature Driven Structure–Function Relationship of Polysaccharide Producing Bacterial Glycosyl Transferase Enzyme

Contributions of exopolysaccharides from lactic acid bacteria as biotechnological tools in food, pharmaceutical, and medical applications

(2021) Ghoson M. Daba et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Polymeric Materials Used for Immobilisation of Bacteria for the Bioremediation of Contaminants in Water

(2021) Dmitriy Berillo et al.   Polymers

Biomedical Applications of Bacteria-Derived Polymers

(2021) Jonathan David Hinchliffe et al.   Polymers

A Comparative Analysis of Allergen Proteins between Plants and Animals Using Several Computational Tools and Chou’s PseAAC Concept

(2020) Mandana Behbahani et al.   INTERNATIONAL ARCHIVES OF ALLERGY AND IMMUNOLOGY

Synthesis, molecular docking, and biological activities of new cyanopyridine derivatives containing phenylurea

(2020) Hayreddin Gezegen et al.   ARCHIV DER PHARMAZIE

Plasmid-encoded glycosyltransferase operon is responsible for exopolysaccharide production, cell aggregation, and bile resistance in a probiotic strain, Lactobacillus brevis KB290

(2019) Masanori Fukao et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Applicability of Instability Index for In vitro Protein Stability Prediction

(2019) Dilani G. Gamage et al.   PROTEIN AND PEPTIDE LETTERS

Naturally-derived biopolymers: Potential platforms for enzyme immobilization

(2019) Muhammad Bilal et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

A deep dense inception network for protein beta‐turn prediction

(2019) Chao Fang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Recent developments in molecular docking technology applied in food science: a review

(2019) Xuan Tao et al.   INTERNATIONAL JOURNAL OF FOOD SCIENCE AND TECHNOLOGY

EnzyDock: Protein–Ligand Docking of Multiple Reactive States along a Reaction Coordinate in Enzymes

(2019) Susanta Das et al.   Journal of Chemical Theory and Computation

Advances in protein structure prediction and design

(2019) Brian Kuhlman et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Characterization of Exopolysaccharide Produced by Pseudomonas sp. PFAB4 for Synthesis of EPS-Coated AgNPs with Antimicrobial Properties

(2019) Aparna Banerjee et al.   JOURNAL OF POLYMERS AND THE ENVIRONMENT

Processivity in Bacterial Glycosyltransferases

(2019) Liubov Yakovlieva et al.   ACS Chemical Biology

Structural-functional analyses of textile dye degrading azoreductase, laccase and peroxidase: A comparative in silico study

(2019) Shrabana Sarkar et al.   ELECTRONIC JOURNAL OF BIOTECHNOLOGY

Prospect of Polysaccharide-Based Materials as Advanced Food Packaging

(2019) Aleksandra Nešić et al.   MOLECULES

An in silico structural approach to characterize human and rainbow trout estrogenicity of mycotoxins: Proof of concept study using zearalenone and alternariol

(2019) Luca Dellafiora et al.   FOOD CHEMISTRY

Recent insights in microbial exopolysaccharide biosynthesis and engineering strategies

(2018) Jochen Schmid   CURRENT OPINION IN BIOTECHNOLOGY

In silico analysis and molecular docking study of angiotensin I-converting enzyme inhibitory peptides from smooth-hound viscera protein hydrolysates fractionated by ultrafiltration

(2018) Ola Abdelhedi et al.   FOOD CHEMISTRY

Thermal restraint of a bacterial exopolysaccharide of shallow vent origin

(2018) Maria Teresa Caccamo et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Structural basis of the molecular ruler mechanism of a bacterial glycosyltransferase

(2018) Ana S. Ramírez et al.   Nature Communications

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Structural and Functional Properties of Exopolysaccharide Excreted by a Novel Bacillus anthracis (Strain PFAB2) of Hot Spring Origin

(2017) Aparna Banerjee et al.   INDIAN JOURNAL OF MICROBIOLOGY

Recent Advances and Applications of Molecular Docking to G Protein-Coupled Receptors

(2017) Damian Bartuzi et al.   MOLECULES

SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules

(2017) Antoine Daina et al.   Scientific Reports

Two strategies to engineer flexible loops for improved enzyme thermostability

(2017) Haoran Yu et al.   Scientific Reports

Influence of Glu/Arg, Asp/Arg, and Glu/Lys Salt Bridges on α -Helical Stability and Folding Kinetics

(2016) Heleen Meuzelaar et al.   BIOPHYSICAL JOURNAL

Bacterial Glycosyltransferases: Challenges and Opportunities of a Highly Diverse Enzyme Class Toward Tailoring Natural Products

(2016) Jochen Schmid et al.   Frontiers in Microbiology

Novel enzymatic processes applied to the food industry

(2016) Anil Kumar Patel et al.   Current Opinion in Food Science

Reaction Mechanisms in Carbohydrate-Active Enzymes: Glycoside Hydrolases and Glycosyltransferases. Insights from ab Initio Quantum Mechanics/Molecular Mechanics Dynamic Simulations

(2015) Albert Ardèvol et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The MEME Suite

(2015) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

PredictProtein—an open resource for online prediction of protein structural and functional features

(2014) Guy Yachdav et al.   NUCLEIC ACIDS RESEARCH

Contribution of hydrogen bonds to protein stability

(2014) C. Nick Pace et al.   PROTEIN SCIENCE

Analysis and Prediction of Highly Effective Antiviral Peptides Based on Random Forests

(2013) Kuan Y. Chang et al.   PLoS One

Hydrophobic environment is a key factor for the stability of thermophilic proteins

(2013) M. Michael Gromiha et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Structural differences between thermophilic and mesophilic membrane proteins

(2012) Alejandro D. Meruelo et al.   PROTEIN SCIENCE

Structure of a metal-independent bacterial glycosyltransferase that catalyzes the synthesis of histo-blood group A antigen

(2012) Nethaji Thiyagarajan et al.   Scientific Reports

Hydrogen Bonding Penalty upon Ligand Binding

(2011) Hongtao Zhao et al.   PLoS One

QMEAN server for protein model quality estimation

(2009) Pascal Benkert et al.   NUCLEIC ACIDS RESEARCH

Real value prediction of protein solvent accessibility using enhanced PSSM features

(2008) Darby Chang et al.   BMC BIOINFORMATICS

Lead Finder: An Approach To Improve Accuracy of Protein−Ligand Docking, Binding Energy Estimation, and Virtual Screening

(2008) Oleg V. Stroganov et al.   Journal of Chemical Information and Modeling

Glycosyltransferases: Structures, Functions, and Mechanisms

(2007) L.L. Lairson et al.   Annual Review of Biochemistry