NGSremix: a software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data

Fast and accurate relatedness estimation from high-throughput sequencing data in the presence of inbreeding

(2019) Kristian Hanghøj et al.   GigaScience

Estimation of kinship coefficient in structured and admixed populations using sparse sequencing data

(2017) Jinzhuang Dou et al.   PLoS Genetics

Model-free Estimation of Recent Genetic Relatedness

(2016) Matthew P. Conomos et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

RelateAdmix: a software tool for estimating relatedness between admixed individuals

(2013) Ida Moltke et al.   BIOINFORMATICS

Identity by Descent: Variation in Meiosis, Across Genomes, and in Populations

(2013) E. A. Thompson   GENETICS

Estimating Individual Admixture Proportions from Next Generation Sequencing Data

(2013) Line Skotte et al.   GENETICS

Estimating Kinship in Admixed Populations

(2012) Timothy Thornton et al.   AMERICAN JOURNAL OF HUMAN GENETICS

SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data

(2012) Rasmus Nielsen et al.   PLoS One

Familial Identification: Population Structure and Relationship Distinguishability

(2012) Rori V. Rohlfs et al.   PLoS Genetics

Robust relationship inference in genome-wide association studies

(2010) Ani Manichaikul et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Relatedness mapping and tracts of relatedness for genome-wide data in the presence of linkage disequilibrium

(2008) Anders Albrechtsen et al.   GENETIC EPIDEMIOLOGY

Simple and Globally Convergent Methods for Accelerating the Convergence of Any EM Algorithm

(2008) RAVI VARADHAN et al.   SCANDINAVIAN JOURNAL OF STATISTICS