Profiling variable-number tandem repeat variation across populations using repeat-pangenome graphs
出版年份 2021 全文链接
标题
Profiling variable-number tandem repeat variation across populations using repeat-pangenome graphs
作者
关键词
-
出版物
Nature Communications
Volume 12, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-07-12
DOI
10.1038/s41467-021-24378-0
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program
- (2021) Daniel Taliun et al. NATURE
- Variable number tandem repeats mediate the expression of proximal genes
- (2021) Mehrdad Bakhtiari et al. Nature Communications
- A robust benchmark for detection of germline large deletions and insertions
- (2020) Justin M. Zook et al. NATURE BIOTECHNOLOGY
- Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads
- (2020) David Porubsky et al. NATURE BIOTECHNOLOGY
- Characterizing the Major Structural Variant Alleles of the Human Genome
- (2019) Peter A. Audano et al. CELL
- Fast and accurate genomic analyses using genome graphs
- (2019) Goran Rakocevic et al. NATURE GENETICS
- Bit-parallel sequence-to-graph alignment
- (2019) Mikko Rautiainen et al. BIOINFORMATICS
- ExpansionHunter: A sequence-graph based tool to analyze variation in short tandem repeat regions
- (2019) Egor Dolzhenko et al. BIOINFORMATICS
- Assembly of long, error-prone reads using repeat graphs
- (2019) Mikhail Kolmogorov et al. NATURE BIOTECHNOLOGY
- Profiling the genome-wide landscape of tandem repeat expansions
- (2019) Nima Mousavi et al. NUCLEIC ACIDS RESEARCH
- Multi-platform discovery of haplotype-resolved structural variation in human genomes
- (2019) Mark J. P. Chaisson et al. Nature Communications
- Whole Genome Analyses of Chinese Population and De Novo Assembly of A Northern Han Genome
- (2019) Zhenglin Du et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- The impact of short tandem repeat variation on gene expression
- (2019) Stephanie Feupe Fotsing et al. NATURE GENETICS
- The International Genome Sample Resource (IGSR) collection of open human genomic variation resources
- (2019) Susan Fairley et al. NUCLEIC ACIDS RESEARCH
- GraphTyper2 enables population-scale genotyping of structural variation using pangenome graphs
- (2019) Hannes P. Eggertsson et al. Nature Communications
- A synthetic-diploid benchmark for accurate variant-calling evaluation
- (2018) Heng Li et al. NATURE METHODS
- Tandem repeats mediating genetic plasticity in health and disease
- (2018) Anthony J. Hannan NATURE REVIEWS GENETICS
- Characterization of a Human-Specific Tandem Repeat Associated with Bipolar Disorder and Schizophrenia
- (2018) Janet H.T. Song et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Variation graph toolkit improves read mapping by representing genetic variation in the reference
- (2018) Erik Garrison et al. NATURE BIOTECHNOLOGY
- Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection
- (2018) Chun Jimmie Ye et al. GENOME RESEARCH
- Targeted genotyping of variable number tandem repeats with adVNTR
- (2018) Mehrdad Bakhtiari et al. GENOME RESEARCH
- A reference haplotype panel for genome-wide imputation of short tandem repeats
- (2018) Shubham Saini et al. Nature Communications
- Genome graphs and the evolution of genome inference
- (2017) Benedict Paten et al. GENOME RESEARCH
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- Genetic effects on gene expression across human tissues
- (2017) François Aguet et al. NATURE
- Interpreting short tandem repeat variations in humans using mutational constraint
- (2017) Melissa Gymrek et al. NATURE GENETICS
- Dense and accurate whole-chromosome haplotyping of individual genomes
- (2017) David Porubsky et al. Nature Communications
- De novo assembly and phasing of a Korean human genome
- (2016) Jeong-Sun Seo et al. NATURE
- The Simons Genome Diversity Project: 300 genomes from 142 diverse populations
- (2016) Swapan Mallick et al. NATURE
- Phased diploid genome assembly with single-molecule real-time sequencing
- (2016) Chen-Shan Chin et al. NATURE METHODS
- Long-read sequencing and de novo assembly of a Chinese genome
- (2016) Lingling Shi et al. Nature Communications
- A global reference for human genetic variation
- (2015) Richard A. Gibbs et al. NATURE
- Abundant contribution of short tandem repeats to gene expression variation in humans
- (2015) Melissa Gymrek et al. NATURE GENETICS
- Global diversity, population stratification, and selection of human copy-number variation
- (2015) Peter H. Sudmant et al. SCIENCE
- High-throughput microbial population genomics using the Cortex variation assembler
- (2012) Zamin Iqbal et al. BIOINFORMATICS
- De novo assembly and genotyping of variants using colored de Bruijn graphs
- (2012) Zamin Iqbal et al. NATURE GENETICS
- Variant CCG and GGC repeats within the CTG expansion dramatically modify mutational dynamics and likely contribute toward unusual symptoms in some myotonic dystrophy type 1 patients
- (2010) Claudia Braida et al. HUMAN MOLECULAR GENETICS
- Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci
- (2010) Andre Franke et al. NATURE GENETICS
- Tandem repeat polymorphisms: modulators of disease susceptibility and candidates for ‘missing heritability’
- (2009) Anthony J. Hannan TRENDS IN GENETICS
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