Variable number tandem repeats mediate the expression of proximal genes

Profiling the genome-wide landscape of tandem repeat expansions

(2019) Nima Mousavi et al.   NUCLEIC ACIDS RESEARCH

The impact of short tandem repeat variation on gene expression

(2019) Stephanie Feupe Fotsing et al.   NATURE GENETICS

Human-specific tandem repeat expansion and differential gene expression during primate evolution

(2019) Arvis Sulovari et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Untangling Genetic Risk for Alzheimer’s Disease

(2018) Anna A. Pimenova et al.   BIOLOGICAL PSYCHIATRY

Decreased serum pyridoxal levels in schizophrenia: meta-analysis and Mendelian randomization analysis

(2018) Yukiko Tomioka et al.   JOURNAL OF PSYCHIATRY & NEUROSCIENCE

GWAS on family history of Alzheimer’s disease

(2018) Riccardo E. Marioni et al.   Translational Psychiatry

Long-read sequencing across the C9orf72 ‘GGGGCC’ repeat expansion: implications for clinical use and genetic discovery efforts in human disease

(2018) Mark T. W. Ebbert et al.   Molecular Neurodegeneration

Targeted genotyping of variable number tandem repeats with adVNTR

(2018) Mehrdad Bakhtiari et al.   GENOME RESEARCH

Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions

(2018) Sarah M. Urbut et al.   NATURE GENETICS

Detection of long repeat expansions from PCR-free whole-genome sequence data

(2017) Egor Dolzhenko et al.   GENOME RESEARCH

Gene expression profiles indicate tissue-specific obesity regulation changes and strong obesity relevant tissues

(2017) R-H Hao et al.   INTERNATIONAL JOURNAL OF OBESITY

Genetic effects on gene expression across human tissues

(2017) François Aguet et al.   NATURE

The impact of structural variation on human gene expression

(2017) Colby Chiang et al.   NATURE GENETICS

Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer

(2017) Qian Zhang et al.   Scientific Reports

Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis

(2016) Veronika B. Dubinkina et al.   BMC BIOINFORMATICS

Interindividual Variation in DNA Methylation at a Putative POMC Metastable Epiallele Is Associated with Obesity

(2016) Peter Kühnen et al.   Cell Metabolism

A polymorphism in the MSH3 mismatch repair gene is associated with the levels of somatic instability of the expanded CTG repeat in the blood DNA of myotonic dystrophy type 1 patients

(2016) Fernando Morales et al.   DNA REPAIR

A human-specific AS3MT isoform and BORCS7 are molecular risk factors in the 10q24.32 schizophrenia-associated locus

(2016) Ming Li et al.   NATURE MEDICINE

Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans

(2016) Javier Quilez et al.   NUCLEIC ACIDS RESEARCH

MSH3 Promotes Dynamic Behavior of Trinucleotide Repeat Tracts In Vivo

(2015) Gregory M. Williams et al.   GENETICS

Tandem repeat variation in human and great ape populations and its impact on gene expression divergence

(2015) Tugce Bilgin Sonay et al.   GENOME RESEARCH

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Abundant contribution of short tandem repeats to gene expression variation in humans

(2015) Melissa Gymrek et al.   NATURE GENETICS

Large-scale whole-genome sequencing of the Icelandic population

(2015) Daniel F Gudbjartsson et al.   NATURE GENETICS

MSH3 Promotes Dynamic Behavior of Trinucleotide Repeat Tracts In Vivo

(2015) Gregory M. Williams et al.   GENETICS

Identifying Causal Variants at Loci with Multiple Signals of Association

(2014) F. Hormozdiari et al.   GENETICS

The landscape of human STR variation

(2014) Thomas Willems et al.   GENOME RESEARCH

Heritability and genomics of gene expression in peripheral blood

(2014) Fred A Wright et al.   NATURE GENETICS

VNTRseek—a computational tool to detect tandem repeat variants in high-throughput sequencing data

(2014) Yevgeniy Gelfand et al.   NUCLEIC ACIDS RESEARCH

The VNTR in complex disorders: The forgotten polymorphisms? A functional way forward?

(2013) K.J. Brookes   GENOMICS

Transcriptome and genome sequencing uncovers functional variation in humans

(2013) Tuuli Lappalainen et al.   NATURE

lobSTR: A short tandem repeat profiler for personal genomes

(2012) Melissa Gymrek et al.   GENOME RESEARCH

Tandem repeat sequence variation as causative Cis-eQTLs for protein-coding gene expression variation: The case of CSTB

(2012) Christelle Borel et al.   HUMAN MUTATION

Mapping cis- and trans-regulatory effects across multiple tissues in twins

(2012) Elin Grundberg et al.   NATURE GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

(2012) Oliver Stegle et al.   Nature Protocols

ART: a next-generation sequencing read simulator

(2011) Weichun Huang et al.   BIOINFORMATICS

Variable Tandem Repeats Accelerate Evolution of Coding and Regulatory Sequences

(2010) Rita Gemayel et al.   Annual Review of Genetics

A PP4 phosphatase complex dephosphorylates RPA2 to facilitate DNA repair via homologous recombination

(2010) Dong-Hyun Lee et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Candidate Causal Regulatory Effects by Integration of Expression QTLs with Complex Trait Genetic Associations

(2010) Alexandra C. Nica et al.   PLoS Genetics

Finding the missing heritability of complex diseases

(2009) Teri A. Manolio et al.   NATURE

Interleukin 6–174 G/C promoter and variable number of tandem repeats (VNTR) gene polymorphisms in sporadic Alzheimer's disease

(2009) Cristiano Capurso et al.   PROGRESS IN NEURO-PSYCHOPHARMACOLOGY & BIOLOGICAL PSYCHIATRY

Tandem repeat polymorphisms: modulators of disease susceptibility and candidates for ‘missing heritability’

(2009) Anthony J. Hannan   TRENDS IN GENETICS

A Mutation in Hairless Dogs Implicates FOXI3 in Ectodermal Development

(2008) Cord Drögemüller et al.   SCIENCE

Revealing the architecture of gene regulation: the promise of eQTL studies

(2008) Yoav Gilad et al.   TRENDS IN GENETICS