标题
Generalized and scalable trajectory inference in single-cell omics data with VIA
作者
关键词
-
出版物
Nature Communications
Volume 12, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-09-20
DOI
10.1038/s41467-021-25773-3
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Multimodal FACED imaging for large-scale single-cell morphological profiling
- (2021) Gwinky G. K. Yip et al. APL Photonics
- PARC: ultrafast and accurate clustering of phenotypic data of millions of single cells
- (2020) Shobana V Stassen et al. BIOINFORMATICS
- FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory mapping in single-cell time course datasets
- (2020) Melissa E. Ko et al. Nature Protocols
- TinGa: fast and flexible trajectory inference with Growing Neural Gas
- (2020) Helena Todorov et al. BIOINFORMATICS
- Generalizing RNA velocity to transient cell states through dynamical modeling
- (2020) Volker Bergen et al. NATURE BIOTECHNOLOGY
- The relative densities of cytoplasm and nuclear compartments are robust against strong perturbation
- (2020) Kyoohyun Kim et al. BIOPHYSICAL JOURNAL
- Cells of the adult human heart
- (2020) Monika Litviňuková et al. NATURE
- Single-Cell Transcriptome Analysis of Colon Cancer Cell Response to 5-Fluorouracil-Induced DNA Damage
- (2020) Sung Rye Park et al. Cell Reports
- Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data
- (2020) Thinh N. Tran et al. PLoS Computational Biology
- Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage
- (2019) Dvir Aran et al. NATURE IMMUNOLOGY
- Characterization of cell fate probabilities in single-cell data with Palantir
- (2019) Manu Setty et al. NATURE BIOTECHNOLOGY
- The single-cell transcriptional landscape of mammalian organogenesis
- (2019) Junyue Cao et al. NATURE
- Quantitative Phase Imaging Flow Cytometry for Ultra‐Large‐Scale Single‐Cell Biophysical Phenotyping
- (2019) Kelvin C.M. Lee et al. CYTOMETRY PART A
- Role of Cdx factors in early mesodermal fate decisions
- (2019) Tanya E. Foley et al. DEVELOPMENT
- A comparison of single-cell trajectory inference methods
- (2019) Wouter Saelens et al. NATURE BIOTECHNOLOGY
- Comprehensive Integration of Single-Cell Data
- (2019) Tim Stuart et al. CELL
- Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis
- (2019) Aimée Bastidas-Ponce et al. DEVELOPMENT
- Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM
- (2019) Huidong Chen et al. Nature Communications
- A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution
- (2019) Jonathan S. Packer et al. SCIENCE
- STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse
- (2019) David Gomez-Cabrero et al. Scientific Data
- Visualizing structure and transitions in high-dimensional biological data
- (2019) Kevin R. Moon et al. NATURE BIOTECHNOLOGY
- Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
- (2018) Kelly Street et al. BMC GENOMICS
- Recovering Gene Interactions from Single-Cell Data Using Data Diffusion
- (2018) David van Dijk et al. CELL
- Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation
- (2018) Jason D. Buenrostro et al. CELL
- A high-throughput all-optical laser-scanning imaging flow cytometer with biomolecular specificity and subcellular resolution
- (2018) Wenwei Yan et al. Journal of Biophotonics
- The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution
- (2018) James A. Briggs et al. SCIENCE
- Detection of human disease conditions by single-cell morpho-rheological phenotyping of blood
- (2018) Nicole Toepfner et al. eLife
- Quantitative phase imaging in biomedicine
- (2018) YongKeun Park et al. Nature Photonics
- Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement
- (2018) Guangshuai Jia et al. Nature Communications
- Single-Cell Transcriptome Profiling of Mouse and hESC-Derived Pancreatic Progenitors
- (2018) Nicole A.J. Krentz et al. Stem Cell Reports
- Efficient and Robust Approximate Nearest Neighbor Search Using Hierarchical Navigable Small World Graphs
- (2018) Yu A. Malkov et al. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE
- Reversed graph embedding resolves complex single-cell trajectories
- (2017) Xiaojie Qiu et al. NATURE METHODS
- Comprehensive single-cell transcriptional profiling of a multicellular organism
- (2017) Junyue Cao et al. SCIENCE
- Morphogenesis and maturation of the embryonic and postnatal intestine
- (2017) Alana M. Chin et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Massively parallel digital transcriptional profiling of single cells
- (2017) Grace X. Y. Zheng et al. Nature Communications
- Systematic morphological profiling of human gene and allele function via Cell Painting
- (2017) Mohammad Hossein Rohban et al. eLife
- Heterogeneity of the Pancreatic Beta Cell
- (2017) Giselle Dominguez Gutierrez et al. Frontiers in Genetics
- Biophysical and biomolecular determination of cellular age in humans
- (2017) Jude M. Phillip et al. Nature Biomedical Engineering
- Diffusion pseudotime robustly reconstructs lineage branching
- (2016) Laleh Haghverdi et al. NATURE METHODS
- Ultrafast laser-scanning time-stretch imaging at visible wavelengths
- (2016) Jiang-Lai Wu et al. Light-Science & Applications
- Real-time deformability cytometry: on-the-fly cell mechanical phenotyping
- (2015) Oliver Otto et al. NATURE METHODS
- Live-cell mass profiling: an emerging approach in quantitative biophysics
- (2014) Thomas A Zangle et al. NATURE METHODS
- Dynamics extracted from fixed cells reveal feedback linking cell growth to cell cycle
- (2013) Ran Kafri et al. NATURE
- Meis1 regulates postnatal cardiomyocyte cell cycle arrest
- (2013) Ahmed I. Mahmoud et al. NATURE
- Quantitative Diagnosis of Malignant Pleural Effusions by Single-Cell Mechanophenotyping
- (2013) H. T. K. Tse et al. Science Translational Medicine
- Developmental expression and cardiac transcriptional regulation of Myh7b, a third myosin heavy chain in the vertebrate heart
- (2012) Andrew S. Warkman et al. Cytoskeleton
- Densely Interconnected Transcriptional Circuits Control Cell States in Human Hematopoiesis
- (2011) Noa Novershtern et al. CELL
- Isolation and Functional Characterization of α-Smooth Muscle Actin Expressing Cardiomyocytes from Embryonic Stem Cells
- (2010) Shiva Prasad Potta et al. CELLULAR PHYSIOLOGY AND BIOCHEMISTRY
- Optical imaging of cell mass and growth dynamics
- (2008) Gabriel Popescu et al. AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now