标题
Cryo-EM structure and dynamics of the green-light absorbing proteorhodopsin
作者
关键词
-
出版物
Nature Communications
Volume 12, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-07-05
DOI
10.1038/s41467-021-24429-6
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Improvement of cryo-EM maps by density modification
- (2020) Thomas C. Terwilliger et al. NATURE METHODS
- Design and assembly of a chemically switchable and fluorescently traceable light-driven proton pump system for bionanotechnological applications
- (2019) S. Hirschi et al. Scientific Reports
- Directed Insertion of Light-Activated Proteorhodopsin into Asymmetric Polymersomes from an ABC Block Copolymer
- (2019) Jens Gaitzsch et al. NANO LETTERS
- Proteorhodopsin Function is Primarily Mediated by Oligomerization in Different Micellar Surfactant Solutions
- (2019) Matthew N Idso et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Photoreaction Dynamics of Red-Shifting Retinal Analogues Reconstituted in Proteorhodopsin
- (2019) Yusaku Hontani et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Photocycle-dependent conformational changes in the proteorhodopsin cross-protomer Asp–His–Trp triad revealed by DNP-enhanced MAS-NMR
- (2019) Jakob Maciejko et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structure and mechanisms of sodium-pumping KR2 rhodopsin
- (2019) Kirill Kovalev et al. Science Advances
- Accelerating Membrane Simulations with Hydrogen Mass Repartitioning
- (2019) Curtis Balusek et al. Journal of Chemical Theory and Computation
- Microbial rhodopsins are major contributors to the solar energy captured in the sea
- (2019) Laura Gómez-Consarnau et al. Science Advances
- X-ray Crystallographic Structure and Oligomerization of Gloeobacter Rhodopsin
- (2019) Takefumi Morizumi et al. Scientific Reports
- Oligomeric states of microbial rhodopsins determined by high-speed atomic force microscopy and circular dichroic spectroscopy
- (2018) Mikihiro Shibata et al. Scientific Reports
- Real-space refinement in PHENIX for cryo-EM and crystallography
- (2018) Pavel V. Afonine et al. Acta Crystallographica Section D-Structural Biology
- Allosteric Effects of the Proton Donor on the Microbial Proton Pump, Proteorhodopsin
- (2018) Sadegh Faramarzi et al. BIOPHYSICAL JOURNAL
- New tools for automated high-resolution cryo-EM structure determination in RELION-3
- (2018) Jasenko Zivanov et al. eLife
- MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
- (2017) Shawn Q Zheng et al. NATURE METHODS
- cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
- (2017) Ali Punjani et al. NATURE METHODS
- MolProbity: More and better reference data for improved all-atom structure validation
- (2017) Christopher J. Williams et al. PROTEIN SCIENCE
- OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
- (2017) Peter Eastman et al. PLoS Computational Biology
- Engineering a Chemical Switch into the Light-driven Proton Pump Proteorhodopsin by Cysteine Mutagenesis and Thiol Modification
- (2016) Daniel Harder et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Proteorhodopsin Activation Is Modulated by Dynamic Changes in Internal Hydration
- (2015) Jun Feng et al. BIOCHEMISTRY
- Functional Consequences of the Oligomeric Assembly of Proteorhodopsin
- (2015) Sunyia Hussain et al. JOURNAL OF MOLECULAR BIOLOGY
- CTFFIND4: Fast and accurate defocus estimation from electron micrographs
- (2015) Alexis Rohou et al. JOURNAL OF STRUCTURAL BIOLOGY
- Visualizing Specific Cross-Protomer Interactions in the Homo-Oligomeric Membrane Protein Proteorhodopsin by Dynamic-Nuclear-Polarization-Enhanced Solid-State NMR
- (2015) Jakob Maciejko et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Helix kinks are equally prevalent in soluble and membrane proteins
- (2014) Henry R. Wilman et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Cross-protomer interaction with the photoactive site in oligomeric proteorhodopsin complexes
- (2013) Tingting Ran et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Transmembrane Protein Activation Refined by Site-Specific Hydration Dynamics
- (2013) Sunyia Hussain et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- The EF Loop in Green Proteorhodopsin Affects Conformation and Photocycle dynamics
- (2013) Michaela Mehler et al. BIOPHYSICAL JOURNAL
- Structural Insight into Proteorhodopsin Oligomers
- (2013) Katherine M. Stone et al. BIOPHYSICAL JOURNAL
- Retinal Conformation Governs pKa of Protonated Schiff Base in Rhodopsin Activation
- (2013) Shengshuang Zhu et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Structural insights into the proton pumping by unusual proteorhodopsin from nonmarine bacteria
- (2013) I. Gushchin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Deprotonation of D96 in Bacteriorhodopsin Opens the Proton Uptake Pathway
- (2013) Ting Wang et al. STRUCTURE
- Global abundance of microbial rhodopsins
- (2012) Omri M Finkel et al. ISME Journal
- Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
- (2012) Robert B. Best et al. Journal of Chemical Theory and Computation
- RELION: Implementation of a Bayesian approach to cryo-EM structure determination
- (2012) Sjors H.W. Scheres JOURNAL OF STRUCTURAL BIOLOGY
- Shifting hydrogen bonds may produce flexible transmembrane helices
- (2012) Z. Cao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Solution NMR Structure of Proteorhodopsin
- (2011) Sina Reckel et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- ProDy: Protein Dynamics Inferred from Theory and Experiments
- (2011) A. Bakan et al. BIOINFORMATICS
- The Microbial Opsin Family of Optogenetic Tools
- (2011) Feng Zhang et al. CELL
- His75−Asp97 Cluster in Green Proteorhodopsin
- (2011) Franziska Hempelmann et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- OPM database and PPM web server: resources for positioning of proteins in membranes
- (2011) Mikhail A. Lomize et al. NUCLEIC ACIDS RESEARCH
- Features and development ofCoot
- (2010) P. Emsley et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- PHENIX: a comprehensive Python-based system for macromolecular structure solution
- (2010) Paul D. Adams et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Potential of light-harvesting proton pumps for bioenergy applications
- (2010) Jessica M Walter et al. CURRENT OPINION IN BIOTECHNOLOGY
- Three-Dimensional Solid-State NMR Study of a Seven-Helical Integral Membrane Proton Pump—Structural Insights
- (2009) Lichi Shi et al. JOURNAL OF MOLECULAR BIOLOGY
- Color Change of Proteorhodopsin by a Single Amino Acid Replacement at a Distant Cytoplasmic Loop
- (2008) Maiko Yoshitsugu et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Protonation State of Glu142 Differs in the Green- and Blue-Absorbing Variants of Proteorhodopsin†
- (2008) Joel M. Kralj et al. BIOCHEMISTRY
- Screening and characterization of proteorhodopsin color-tuning mutations in Escherichia coli with endogenous retinal synthesis
- (2008) So Young Kim et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- CHARMM-GUI: A web-based graphical user interface for CHARMM
- (2008) Sunhwan Jo et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore
- (2008) H. Luecke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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