From gene banks to farmer’s fields: using genomic selection to identify donors for a breeding program in rice to close the yield gap on smallholder farms

Genomic Prediction of Maize Micro‐Phenotypes Provides Insights for Optimizing Selection and Mining Diversity

(2020) Xiaoqing Yu et al.   PLANT BIOTECHNOLOGY JOURNAL

Genomic Prediction with Genotype by Environment Interaction Analysis for Kernel Zinc Concentration in Tropical Maize Germplasm

(2020) Edna K. Mageto et al.   G3-Genes Genomes Genetics

Genomic Prediction Enhanced Sparse Testing for Multi-environment Trials

(2020) Diego Jarquin et al.   G3-Genes Genomes Genetics

Assessment of the Potential for Genomic Selection To Improve Husk Traits in Maize

(2020) Zhenhai Cui et al.   G3-Genes Genomes Genetics

Design of training populations for selective phenotyping in genomic prediction

(2019) Deniz Akdemir et al.   Scientific Reports

Challenges and opportunities for improving N use efficiency for rice production in sub-Saharan Africa

(2019) Yasuhiro Tsujimoto et al.   PLANT PRODUCTION SCIENCE

Yield-limiting macronutrients for rice in sub-Saharan Africa

(2018) Kazuki Saito et al.   GEODERMA

Bayesian optimization for genomic selection: a method for discovering the best genotype among a large number of candidates

(2017) Ryokei Tanaka et al.   THEORETICAL AND APPLIED GENETICS

Genomic Selection in Plant Breeding: Methods, Models, and Perspectives

(2017) José Crossa et al.   TRENDS IN PLANT SCIENCE

Genotype Imputation with Millions of Reference Samples

(2016) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The role of root size versus root efficiency in phosphorus acquisition in rice

(2016) Asako Mori et al.   JOURNAL OF EXPERIMENTAL BOTANY

Rice SNP-seek database update: new SNPs, indels, and queries

(2016) Locedie Mansueto et al.   NUCLEIC ACIDS RESEARCH

Integration of P acquisition efficiency, P utilization efficiency and low grain P concentrations into P-efficient rice genotypes for specific target environments

(2015) Elke Vandamme et al.   NUTRIENT CYCLING IN AGROECOSYSTEMS

Screening for internal phosphorus utilisation efficiency: comparison of genotypes at equal shoot P content is critical

(2015) Terry J. Rose et al.   PLANT AND SOIL

Genomic prediction of seedling root length in maize (Zea maysL.)

(2015) Jordon Pace et al.   PLANT JOURNAL

Accuracy of Genomic Selection in a Rice Synthetic Population Developed for Recurrent Selection Breeding

(2015) Cécile Grenier et al.   PLoS One

A Ranking Approach to Genomic Selection

(2015) Mathieu Blondel et al.   PLoS One

Increased Prediction Accuracy in Wheat Breeding Trials Using a Marker × Environment Interaction Genomic Selection Model

(2015) Marco Lopez-Cruz et al.   G3-Genes Genomes Genetics

Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines

(2015) Jennifer Spindel et al.   PLoS Genetics

Unmasking Novel Loci for Internal Phosphorus Utilization Efficiency in Rice Germplasm through Genome-Wide Association Analysis

(2015) Matthias Wissuwa et al.   PLoS One

Genome-Wide Regression and Prediction with the BGLR Statistical Package

(2014) P. Perez et al.   GENETICS

Genomic-enabled prediction with classification algorithms

(2014) L Ornella et al.   HEREDITY

Exploring the areas of applicability of whole-genome prediction methods for Asian rice (Oryza sativa L.)

(2014) Akio Onogi et al.   THEORETICAL AND APPLIED GENETICS

Accuracy of Across-Environment Genome-Wide Prediction in Maize Nested Association Mapping Populations

(2013) Zhigang Guo et al.   G3-Genes Genomes Genetics

Resource Allocation for Maximizing Prediction Accuracy and Genetic Gain of Genomic Selection in Plant Breeding: A Simulation Experiment

(2013) Aaron J. Lorenz   G3-Genes Genomes Genetics

Genomics of gene banks: A case study in rice

(2012) Susan R. McCouch et al.   AMERICAN JOURNAL OF BOTANY

Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers

(2012) Juan Burgueño et al.   CROP SCIENCE

Maximizing the Reliability of Genomic Selection by Optimizing the Calibration Set of Reference Individuals: Comparison of Methods in Two Diverse Groups of Maize Inbreds (Zea mays L.)

(2012) R. Rincent et al.   GENETICS

Accuracy of genomic selection in European maize elite breeding populations

(2011) Yusheng Zhao et al.   THEORETICAL AND APPLIED GENETICS

Genomic Selection Accuracy using Multifamily Prediction Models in a Wheat Breeding Program

(2011) Elliot L. Heffner et al.   Plant Genome

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Prediction of Genetic Values of Quantitative Traits in Plant Breeding Using Pedigree and Molecular Markers

(2010) J. Crossa et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Accuracy of Predicting the Genetic Risk of Disease Using a Genome-Wide Approach

(2008) Hans D. Daetwyler et al.   PLoS One