Integrating GWAS and transcriptomics to identify genes involved in seed dormancy in rice
出版年份 2021 全文链接
标题
Integrating GWAS and transcriptomics to identify genes involved in seed dormancy in rice
作者
关键词
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出版物
THEORETICAL AND APPLIED GENETICS
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-07-27
DOI
10.1007/s00122-021-03911-1
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Dynamic transcriptome and metabolome analyses of two types of rice during the seed germination and young seedling growth stages
- (2020) Jing Yang et al. BMC GENOMICS
- Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice
- (2019) Ruijuan Ren et al. PLANTA
- Genome-wide association study of pre-harvest sprouting tolerance using a 90K SNP array in common wheat (Triticum aestivum L.)
- (2019) Yulei Zhu et al. THEORETICAL AND APPLIED GENETICS
- Control of rice pre‐harvest sprouting by glutaredoxin‐mediated abscisic acid signaling
- (2019) Fan Xu et al. PLANT JOURNAL
- Potential Effects of Awn Length Variation on Seed Yield and Components, Seed Dispersal and Germination Performance in Siberian Wildrye (Elymus sibiricus L.)
- (2019) Fabrice Ntakirutimana et al. Plants-Basel
- Genome-Wide Association Mapping for Tolerance to Preharvest Sprouting and Low Falling Numbers in Wheat
- (2018) Shantel A. Martinez et al. Frontiers in Plant Science
- Genome-Wide Association Study of Seed Dormancy and the Genomic Consequences of Improvement Footprints in Rice (Oryza sativa L.)
- (2018) Qing Lu et al. Frontiers in Plant Science
- Genomic variation in 3,010 diverse accessions of Asian cultivated rice
- (2018) Wensheng Wang et al. NATURE
- Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re-oxygenation
- (2017) Reena Narsai et al. PLANT JOURNAL
- AtAIRP2 E3 Ligase Affects ABA and High-Salinity Responses by Stimulating Its ATP1/SDIRIP1 Substrate Turnover
- (2017) Tae Rin Oh et al. PLANT PHYSIOLOGY
- Genome-wide association mapping revealed a diverse genetic basis of seed dormancy across subpopulations in rice (Oryza sativa L.)
- (2016) Risper Auma Magwa et al. BMC GENETICS
- Seed dormancy QTL identification across a Sorghum bicolor segregating population
- (2016) Renata Cantoro et al. EUPHYTICA
- Rice SNP-seek database update: new SNPs, indels, and queries
- (2016) Locedie Mansueto et al. NUCLEIC ACIDS RESEARCH
- The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10
- (2016) Nikita Bhatnagar et al. PLANT MOLECULAR BIOLOGY
- GAPIT Version 2: An Enhanced Integrated Tool for Genomic Association and Prediction
- (2016) You Tang et al. Plant Genome
- Fluctuation of Arabidopsis seed dormancy with relative humidity and temperature during dry storage
- (2015) Isabelle Basbouss-Serhal et al. JOURNAL OF EXPERIMENTAL BOTANY
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- Genome-wide association studies in elite varieties of German winter barley using single-marker and haplotype-based methods
- (2015) Inka Gawenda et al. PLANT BREEDING
- Greater power and computational efficiency for kernel-based association testing of sets of genetic variants
- (2014) Christoph Lippert et al. BIOINFORMATICS
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RiceVarMap: a comprehensive database of rice genomic variations
- (2014) Hu Zhao et al. NUCLEIC ACIDS RESEARCH
- Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice
- (2014) Wanneng Yang et al. Nature Communications
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- An-1 Encodes a Basic Helix-Loop-Helix Protein That Regulates Awn Development, Grain Size, and Grain Number in Rice
- (2013) J. Luo et al. PLANT CELL
- The riceGERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism
- (2013) Xiaoli Guo et al. PLANT JOURNAL
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Association Between Seed Dormancy and Pericarp Color Is Controlled by a Pleiotropic Gene That Regulates Abscisic Acid and Flavonoid Synthesis in Weedy Red Rice
- (2011) Xing-You Gu et al. GENETICS
- Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
- (2010) Susanna Atwell et al. NATURE
- Genome-wide association studies of 14 agronomic traits in rice landraces
- (2010) Xuehui Huang et al. NATURE GENETICS
- Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice
- (2010) K. Sugimoto et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies
- (2009) Priya Duggal et al. BMC GENOMICS
- SALAD database: a motif-based database of protein annotations for plant comparative genomics
- (2009) Motohiro Mihara et al. NUCLEIC ACIDS RESEARCH
- The qSD12 underlying gene promotes abscisic acid accumulation in early developing seeds to induce primary dormancy in rice
- (2009) Xing-You Gu et al. PLANT MOLECULAR BIOLOGY
- Molecular Aspects of Seed Dormancy
- (2008) Ruth Finkelstein et al. Annual Review of Plant Biology
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