Temperature and microbial interactions drive the deterministic assembly processes in sediments of hot springs

Temperature governs the distribution of hot spring microbial community in three hydrothermal fields, Eastern Tibetan Plateau Geothermal Belt, Western China

(2020) Liang Guo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Niche width of above‐ and below‐ground organisms varied in predicting biodiversity profiling along a latitudinal gradient

(2020) Kai Feng et al.   MOLECULAR ECOLOGY

Comparative Analysis of Microbial Diversity Across Temperature Gradients in Hot Springs From Yellowstone and Iceland

(2020) Peter T. Podar et al.   Frontiers in Microbiology

Carbon Fixation by Photosynthetic Mats along a Temperature Gradient in a Tengchong Hot Spring

(2020) Yidi Zhang et al.   Journal of Geophysical Research-Biogeosciences

Deterministic Assembly and Diversity Gradient Altered the Biofilm Community Performances of Bioreactors

(2019) Zhaojing Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

A review of the mechanisms of mineral-based metabolism in early Earth analog rock-hosted hydrothermal ecosystems

(2019) Maximiliano J. Amenabar et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Environmental filtering determines family-level structure of sulfate-reducing microbial communities in subsurface marine sediments

(2019) Ian P. G. Marshall et al.   ISME Journal

Geologic legacy spanning >90 years explains unique Yellowstone hot spring geochemistry and biodiversity

(2019) Devon Payne et al.   ENVIRONMENTAL MICROBIOLOGY

A general framework for quantitatively assessing ecological stochasticity

(2019) Daliang Ning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Determination of vertical and horizontal assemblage drivers of bacterial community in a heavily polluted urban river

(2019) Wenlong Zhang et al.   WATER RESEARCH

Temperature drives local contributions to beta diversity in mountain streams: Stochastic and deterministic processes

(2019) Jianjun Wang et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Mineral iron dissolution in Trichodesmium colonies: The role of O 2 and pH microenvironments

(2019) Meri Eichner et al.   LIMNOLOGY AND OCEANOGRAPHY

Functional and phylogenetic response of soil prokaryotic community under an artificial moisture gradient

(2018) Petr Heděnec et al.   APPLIED SOIL ECOLOGY

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Microbial ecology of two hot springs of Sikkim: Predominate population and geochemistry

(2018) Ishfaq Nabi Najar et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Mineral dissolution and reprecipitation mediated by an amorphous phase

(2018) Matthias Konrad-Schmolke et al.   Nature Communications

Microbial biogeography of 925 geothermal springs in New Zealand

(2018) Jean F. Power et al.   Nature Communications

Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities

(2017) Wenxue Wu et al.   ISME Journal

Geobiological feedbacks and the evolution of thermoacidophiles

(2017) Daniel R Colman et al.   ISME Journal

Biodiversity and species competition regulate the resilience of microbial biofilm community

(2017) Kai Feng et al.   MOLECULAR ECOLOGY

Speciation gradients and the distribution of biodiversity

(2017) Dolph Schluter et al.   NATURE

Microbial substrate preference dictated by energy demand rather than supply

(2017) Maximiliano J. Amenabar et al.   Nature Geoscience

Soil networks become more connected and take up more carbon as nature restoration progresses

(2017) Elly Morriën et al.   Nature Communications

Diversity spurs diversification in ecological communities

(2017) Vincent Calcagno et al.   Nature Communications

Conservation of Species- and Trait-Based Modeling Network Interactions in Extremely Acidic Microbial Community Assembly

(2017) Jialiang Kuang et al.   Frontiers in Microbiology

Mineral Type Structures Soil Microbial Communities

(2016) Engy Ahmed et al.   GEOMICROBIOLOGY JOURNAL

Distinct Factors Shape Aquatic and Sedimentary Microbial Community Structures in the Lakes of Western China

(2016) Jian Yang et al.   Frontiers in Microbiology

Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs

(2016) Jacob P. Beam et al.   Frontiers in Microbiology

Species Richness at Continental Scales Is Dominated by Ecological Limits

(2015) Daniel L. Rabosky et al.   AMERICAN NATURALIST

The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China

(2015) Lemian Liu et al.   ISME Journal

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Mineralosphere Concept: Mineralogical Control of the Distribution and Function of Mineral-associated Bacterial Communities

(2015) Stephane Uroz et al.   TRENDS IN MICROBIOLOGY

A network-based approach to disturbance transmission through microbial interactions

(2015) Dana E. Hunt et al.   Frontiers in Microbiology

Changes in hot spring temperature and hydrogeology of the Alpine Fault hanging wall, New Zealand, induced by distal South Island earthquakes

(2014) S. C. Cox et al.   GEOFLUIDS

A role for biotic filtering in driving phylogenetic clustering in soil bacterial communities

(2014) Marta Goberna et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Humboldt’s spa: microbial diversity is controlled by temperature in geothermal environments

(2014) Christine E Sharp et al.   ISME Journal

Dynamics in microbial communities: unraveling mechanisms to identify principles

(2014) Allan Konopka et al.   ISME Journal

Bacterial assembly and temporal dynamics in activated sludge of a full-scale municipal wastewater treatment plant

(2014) Feng Ju et al.   ISME Journal

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem

(2014) William Inskeep   Frontiers in Microbiology

Microbial contributions to coupled arsenic and sulfur cycling in the acid-sulfide hot spring Champagne Pool, New Zealand

(2014) Katrin Hug et al.   Frontiers in Microbiology

Acidic Microenvironments in Waste Rock Characterized by Neutral Drainage: Bacteria–Mineral Interactions at Sulfide Surfaces

(2014) John Dockrey et al.   Minerals

Thaumarchaeotal Signature Gene Distribution in Sediments of the Northern South China Sea: an Indicator of the Metabolic Intersection of the Marine Carbon, Nitrogen, and Phosphorus Cycles?

(2013) Hongyue Dang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

In situanalysis of oxygen consumption and diffusive transport in high-temperature acidic iron-oxide microbial mats

(2013) Hans C. Bernstein et al.   ENVIRONMENTAL MICROBIOLOGY

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Contrasting Patterns of Community Assembly in the Stratified Water Column of Great Salt Lake, Utah

(2013) Jonathan E. Meuser et al.   MICROBIAL ECOLOGY

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities

(2012) Jessica K Cole et al.   ISME Journal

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Diversity of Interaction Types and Ecological Community Stability

(2012) A. Mougi et al.   SCIENCE

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Ammonia oxidation, denitrification and dissimilatory nitrate reduction to ammonium in two US Great Basin hot springs with abundant ammonia-oxidizing archaea

(2011) Jeremy A. Dodsworth et al.   ENVIRONMENTAL MICROBIOLOGY

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

(2011) Silke Langenheder et al.   ISME Journal

Role of the terrestrial subsurface in shaping geothermal spring microbial communities

(2011) Sara Tin et al.   Environmental Microbiology Reports

Distance-based multivariate analyses confound location and dispersion effects

(2011) David I. Warton et al.   Methods in Ecology and Evolution

Using null models to disentangle variation in community dissimilarity from variation in α-diversity

(2011) Jonathan M. Chase et al.   Ecosphere

Influence of the Chuxiong Yao'an Earthquake on the Mineralization of Hot Springs in the Tengchong Geothermal Area, Southwestern China

(2010) DENG Jun et al.   ACTA GEOLOGICA SINICA-ENGLISH EDITION

Quantifying inorganic sources of geochemical energy in hydrothermal ecosystems, Yellowstone National Park, USA

(2010) Everett L. Shock et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

[FeFe]-hydrogenase in Yellowstone National Park: evidence for dispersal limitation and phylogenetic niche conservatism

(2010) Eric S Boyd et al.   ISME Journal

Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments

(2010) J. M. Chase   SCIENCE

Functional Molecular Ecological Networks

(2010) J. Zhou et al.   mBio

Bar-Coded Pyrosequencing Reveals Shared Bacterial Community Properties along the Temperature Gradients of Two Alkaline Hot Springs in Yellowstone National Park

(2009) S. R. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Partitioning the turnover and nestedness components of beta diversity

(2009) Andrés Baselga   GLOBAL ECOLOGY AND BIOGEOGRAPHY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Relative Importance of H2 and H2S as Energy Sources for Primary Production in Geothermal Springs

(2008) S. D'Imperio et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular Characterization of the Diversity and Distribution of a Thermal Spring Microbial Community by Using rRNA and Metabolic Genes

(2008) J. R. Hall et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Volcanic calderas delineate biogeographic provinces among Yellowstone thermophiles

(2008) Cristina Takacs-Vesbach et al.   ENVIRONMENTAL MICROBIOLOGY

Geochemistry of the Rehai and Ruidian geothermal waters, Yunnan Province, China

(2008) Guoping Zhang et al.   GEOTHERMICS