Environmental filtering determines family-level structure of sulfate-reducing microbial communities in subsurface marine sediments

Beyond the tip of the iceberg; a new view of the diversity of sulfite- and sulfate-reducing microorganisms

(2018) Adrien Vigneron et al.   ISME Journal

Metagenomes from deep Baltic Sea sediments reveal how past and present environmental conditions determine microbial community composition

(2018) Ian P.G. Marshall et al.   Marine Genomics

Variations in bacterial and archaeal communities along depth profiles of Alaskan soil cores

(2018) Binu Mani Tripathi et al.   Scientific Reports

Carbon oxidation and bioirrigation in sediments along a Skagerrak-Kattegat-Belt Sea depth transect

(2018) E Kristensen et al.   MARINE ECOLOGY PROGRESS SERIES

Emergent simplicity in microbial community assembly

(2018) Joshua E. Goldford et al.   SCIENCE

Single-Cell Genomics Reveals a Diverse Metabolic Potential of Uncultivated Desulfatiglans-Related Deltaproteobacteria Widely Distributed in Marine Sediment

(2018) Lara M. Jochum et al.   Frontiers in Microbiology

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Control on rate and pathway of anaerobic organic carbon degradation in the seabed

(2017) F. Beulig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial community assembly and evolution in subseafloor sediment

(2017) Piotr Starnawski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bioturbation as a key driver behind the dominance of Bacteria over Archaea in near-surface sediment

(2017) Xihan Chen et al.   Scientific Reports

Climate oscillations reflected within the microbiome of Arabian Sea sediments

(2017) William D. Orsi et al.   Scientific Reports

Slow Microbial Life in the Seabed

(2016) Bo Barker Jørgensen et al.   Annual Review of Marine Science

Diversity analysis of sulfite- and sulfate-reducing microorganisms by multiplex dsrA and dsrB amplicon sequencing using new primers and mock community-optimized bioinformatics

(2016) Claus Pelikan et al.   ENVIRONMENTAL MICROBIOLOGY

Controls on subsurface methane fluxes and shallow gas formation in Baltic Sea sediment (Aarhus Bay, Denmark)

(2016) Sabine Flury et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects

(2015) Tadashi Fukami   Annual Review of Ecology Evolution and Systematics

Decreases in average bacterial community rRNA operon copy number during succession

(2015) Diana R Nemergut et al.   ISME Journal

Bacterial diversity and community composition from seasurface to subseafloor

(2015) Emily A Walsh et al.   ISME Journal

Relative Roles of Deterministic and Stochastic Processes in Driving the Vertical Distribution of Bacterial Communities in a Permafrost Core from the Qinghai-Tibet Plateau, China

(2015) Weigang Hu et al.   PLoS One

Microbiomes in light of traits: A phylogenetic perspective

(2015) J. B. H. Martiny et al.   SCIENCE

Reclassification of Desulfobacterium anilini as Desulfatiglans anilini comb. nov. within Desulfatiglans gen. nov., and description of a 4-chlorophenol-degrading sulfate-reducing bacterium, Desulfatiglans parachlorophenolica sp. nov.

(2014) D. Suzuki et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases

(2014) Albert Leopold Müller et al.   ISME Journal

Microbial life under extreme energy limitation

(2013) Tori M. Hoehler et al.   NATURE REVIEWS MICROBIOLOGY

Sediment Bacterial Communities Reflect the History of a Sea Basin

(2013) Christina Lyra et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Phylogenetic Clustering of Soil Microbial Communities by 16S rRNA but Not 16S rRNA Genes

(2012) Kristen M. DeAngelis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

A cryptic sulfur cycle driven by iron in the methane zone of marine sediment (Aarhus Bay, Denmark)

(2011) Lars Holmkvist et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

What is bioturbation? The need for a precise definition for fauna in aquatic sciences

(2011) E Kristensen et al.   MARINE ECOLOGY PROGRESS SERIES

Metabolic Flexibility of Sulfate-Reducing Bacteria

(2011) Caroline M. Plugge et al.   Frontiers in Microbiology

Desulfosoma caldarium gen. nov., sp. nov., a thermophilic sulfate-reducing bacterium from a terrestrial hot spring

(2010) S. Baena et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

[FeFe]-hydrogenase in Yellowstone National Park: evidence for dispersal limitation and phylogenetic niche conservatism

(2010) Eric S Boyd et al.   ISME Journal

Towards a consistent classification scheme for geochemical environments, or, why we wish the term ‘suboxic’ would go away

(2009) D. E. CANFIELD et al.   Geobiology

Phylogenetic analysis of community assembly and structure over space and time

(2008) Brent C. Emerson et al.   TRENDS IN ECOLOGY & EVOLUTION