Global range expansion history of pepper (Capsicum spp.) revealed by over 10,000 genebank accessions

Identifying genetic variants underlying phenotypic variation in plants without complete genomes

(2020) Yoav Voichek et al.   NATURE GENETICS

Harnessing the potential of germplasm collections

(2019) Peter Langridge et al.   NATURE GENETICS

Efficient curation of genebanks using next generation sequencing reveals substantial duplication of germplasm accessions

(2019) Narinder Singh et al.   Scientific Reports

Tandem gene duplication and recombination at the AT3 locus in the Solanaceae, a gene essential for capsaicinoid biosynthesis in Capsicum

(2019) Ashley N. Egan et al.   PLoS One

Genetic diversity, population structure, and relationships in a collection of pepper (Capsicum spp.) landraces from the Spanish centre of diversity revealed by genotyping-by-sequencing (GBS)

(2019) Leandro Pereira-Dias et al.   Horticulture Research

Genetic diversity and population structure of Ethiopian Capsicum germplasms

(2019) Abate Mekonnen Solomon et al.   PLoS One

Genomic diversity and novel genome-wide association with fruit morphology in Capsicum, from 746k polymorphic sites

(2019) Vincenza Colonna et al.   Scientific Reports

Genebank genomics highlights the diversity of a global barley collection

(2018) Sara G. Milner et al.   NATURE GENETICS

Plant Genebanks: Present Situation and Proposals for Their Improvement. the Case of the Spanish Network

(2018) María José Díez et al.   Frontiers in Plant Science

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic relationships, diversification and expansion of chili peppers (Capsicum, Solanaceae)

(2016) Carolina Carrizo García et al.   ANNALS OF BOTANY

Genetic diversity and population structure analysis to construct a core collection from a large Capsicum germplasm

(2016) Hea-Young Lee et al.   BMC GENETICS

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data

(2016) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Circadian Clock and Photoperiodic Flowering in Arabidopsis: CONSTANS Is a Hub for Signal Integration

(2016) Jae Sung Shim et al.   PLANT PHYSIOLOGY

Screening Genetic Resources of Capsicum Peppers in Their Primary Center of Diversity in Bolivia and Peru

(2015) Maarten van Zonneveld et al.   PLoS One

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Unlocking the secondary gene-pool of barley with next-generation sequencing

(2014) Neele Wendler et al.   PLANT BIOTECHNOLOGY JOURNAL

New Insights into Capsicum spp Relatedness and the Diversification Process of Capsicum annuum in Spain

(2014) Susana González-Pérez et al.   PLoS One

Multiple lines of evidence for the origin of domesticated chili pepper, Capsicum annuum, in Mexico

(2014) K. H. Kraft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genotyping a large collection of pepper (Capsicum spp.) with SSR loci brings new evidence for the wild origin of cultivated C. annuum and the structuring of genetic diversity by human selection of cultivar types

(2013) Maryse Nicolaï et al.   GENETIC RESOURCES AND CROP EVOLUTION

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Genetic diversity and structure in semiwild and domesticated chiles (Capsicum annuum; Solanaceae) from Mexico

(2009) A. Aguilar-Melendez et al.   AMERICAN JOURNAL OF BOTANY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

A Dynamic Interface for Capsaicinoid Systems Biology

(2009) M. Mazourek et al.   PLANT PHYSIOLOGY

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS