Genetic diversity, population structure, and relationships in a collection of pepper (Capsicum spp.) landraces from the Spanish centre of diversity revealed by genotyping-by-sequencing (GBS)

Genomewide genotyping of a novel Mexican Chile Pepper collection illuminates the history of landrace differentiation after Capsicum annuum L. domestication

(2018) Nathan Taitano et al.   Evolutionary Applications

Whole Genome Resequencing of Capsicum baccatum and Capsicum annuum to Discover Single Nucleotide Polymorphism Related to Powdery Mildew Resistance

(2018) Yul-Kyun Ahn et al.   Scientific Reports

Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library

(2018) Amanda M. Hulse-Kemp et al.   Horticulture Research

Introgressiomics: a new approach for using crop wild relatives in breeding for adaptation to climate change

(2017) Jaime Prohens et al.   EUPHYTICA

Genotyping-by-sequencing: a promising tool for plant genetics research and breeding

(2017) Yong Suk Chung et al.   Horticulture Environment and Biotechnology

Regions Underlying Population Structure and the Genomics of Organ Size Determination in

(2017) Theresa A. Hill et al.   Plant Genome

Genetic diversity and population structure analysis to construct a core collection from a large Capsicum germplasm

(2016) Hea-Young Lee et al.   BMC GENETICS

Genome-wide SNP discovery and population structure analysis in pepper (Capsicum annuum) using genotyping by sequencing

(2016) F. Taranto et al.   BMC GENOMICS

Wild Pepper L. var. : Taxonomy, Plant Morphology, Distribution, Genetic Diversity, Genome Sequencing, and Phytochemical Compounds

(2016) Corina Hayano-Kanashiro et al.   CROP SCIENCE

An ultra-high-density bin map facilitates high-throughput QTL mapping of horticultural traits in pepper (Capsicum annuum)

(2016) Koeun Han et al.   DNA RESEARCH

Development of a SNP array and its application to genetic mapping and diversity assessment in pepper (Capsicum spp.)

(2016) Jiaowen Cheng et al.   Scientific Reports

Genome-wide Diversity and Association Mapping for Capsaicinoids and Fruit Weight in Capsicum annuum L

(2016) Padma Nimmakayala et al.   Scientific Reports

Successful Wide Hybridization and Introgression Breeding in a Diverse Set of Common Peppers (Capsicum annuum) Using Different Cultivated Ají (C. baccatum) Accessions as Donor Parents

(2015) Juan Pablo Manzur et al.   PLoS One

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

(2014) Seungill Kim et al.   NATURE GENETICS

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

New Insights into Capsicum spp Relatedness and the Diversification Process of Capsicum annuum in Spain

(2014) Susana González-Pérez et al.   PLoS One

Multiple lines of evidence for the origin of domesticated chili pepper, Capsicum annuum, in Mexico

(2014) K. H. Kraft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

(2014) C. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and Cost-Effective Genetic Mapping in Apple Using Next-Generation Sequencing

(2014) K. M. Gardner et al.   G3-Genes Genomes Genetics

Genotyping-by-sequencing (GBS), an ultimate marker-assisted selection (MAS) tool to accelerate plant breeding

(2014) Jiangfeng He et al.   Frontiers in Plant Science

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

Genotyping a large collection of pepper (Capsicum spp.) with SSR loci brings new evidence for the wild origin of cultivated C. annuum and the structuring of genetic diversity by human selection of cultivar types

(2013) Maryse Nicolaï et al.   GENETIC RESOURCES AND CROP EVOLUTION

An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping

(2013) Humira Sonah et al.   PLoS One

A competitive strategy for vegetable products: traditional varieties of tomato in the local market

(2013) M. Brugarolas et al.   SPANISH JOURNAL OF AGRICULTURAL RESEARCH

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes

(2012) Hamid Ashrafi et al.   BMC GENOMICS

Identification of QTLs for capsaicinoids, fruit quality, and plant architecture-related traits in an interspecific Capsicum RIL population

(2012) Shawn C. Yarnes et al.   GENOME

Genotyping-by-Sequencing for Plant Breeding and Genetics

(2012) Jesse A. Poland et al.   Plant Genome

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Genetic diversity and population structure of Capsicum baccatum genetic resources

(2011) Elena Albrecht et al.   GENETIC RESOURCES AND CROP EVOLUTION

Taxonomy and genetic diversity of domesticated Capsicum species in the Andean region

(2011) Vicente P. Ibiza et al.   GENETIC RESOURCES AND CROP EVOLUTION

Evolution of the large genome in Capsicum annuum occurred through accumulation of single-type long terminal repeat retrotransposons and their derivatives

(2011) Minkyu Park et al.   PLANT JOURNAL

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

HS-SPME Comparative Analysis of Genotypic Diversity in the Volatile Fraction and Aroma-Contributing Compounds of Capsicum Fruits from theannuum−chinense−frutescensComplex

(2010) Adrián Rodríguez-Burruezo et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Genetic Relationships Within and Between Capsicum Species

(2009) Ayşe Gul Ince et al.   BIOCHEMICAL GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genetics in geographically structured populations: defining, estimating and interpreting FST

(2009) Kent E. Holsinger et al.   NATURE REVIEWS GENETICS

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS