On the use of genome‐wide data to model and date the time of anthropogenic hybridisation: An example from the Scottish wildcat

Locus‐specific introgression in young hybrid swarms: Drift may dominate selection

(2021) S. Eryn McFarlane et al.   MOLECULAR ECOLOGY

Projecting introgression from domestic cats into European wildcats in the Swiss Jura

(2020) Claudio S. Quilodrán et al.   Evolutionary Applications

Detecting the True Extent of Introgression during Anthropogenic Hybridization

(2019) S. Eryn McFarlane et al.   TRENDS IN ECOLOGY & EVOLUTION

Increased genetic marker density reveals high levels of admixture between red deer and introduced Japanese sika in Kintyre, Scotland

(2019) S. Eryn McFarlane et al.   Evolutionary Applications

Genomic approaches to identify hybrids and estimate admixture times in European wildcat populations

(2019) Federica Mattucci et al.   Scientific Reports

Range expansion as an explanation for introgression in European wildcats

(2018) B. Nussberger et al.   BIOLOGICAL CONSERVATION

ABC random forests for Bayesian parameter inference

(2018) Louis Raynal et al.   BIOINFORMATICS

Distinguishing the victim from the threat: SNP-based methods reveal the extent of introgressive hybridization between wildcats and domestic cats in Scotland and inform future in situ and ex situ management options for species restoration

(2018) Helen V. Senn et al.   Evolutionary Applications

Disentangling Timing of Admixture, Patterns of Introgression, and Phenotypic Indicators in a Hybridizing Wolf Population

(2017) Marco Galaverni et al.   MOLECULAR BIOLOGY AND EVOLUTION

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

Hybridization and extinction

(2016) Marco Todesco et al.   Evolutionary Applications

A method for detecting recent changes in contemporary effective population size from linkage disequilibrium at linked and unlinked loci

(2016) C M Hollenbeck et al.   HEREDITY

SLiM 2: Flexible, Interactive Forward Genetic Simulations

(2016) Benjamin C. Haller et al.   MOLECULAR BIOLOGY AND EVOLUTION

pcadapt: anRpackage to perform genome scans for selection based on principal component analysis

(2016) Keurcien Luu et al.   Molecular Ecology Resources

European wildcat populations are subdivided into five main biogeographic groups: consequences of Pleistocene climate changes or recent anthropogenic fragmentation?

(2015) Federica Mattucci et al.   Ecology and Evolution

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Mapping the spatial configuration of hybridization risk for an endangered population of the European wildcat (Felis silvestris silvestris) in Scotland

(2015) Kerry Kilshaw et al.   Mammal Research

PRIMUS: Rapid Reconstruction of Pedigrees from Genome-wide Estimates of Identity by Descent

(2014) Jeffrey Staples et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A survey of the hybridisation status of Cervus deer species on the island of Ireland

(2014) Stephanie L. Smith et al.   CONSERVATION GENETICS

Single Nucleotide Polymorphism (SNP) Variation of Wolves (Canis lupus) in Southeast Alaska and Comparison with Wolves, Dogs, and Coyotes in North America

(2014) Matthew A. Cronin et al.   JOURNAL OF HEREDITY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

A Genetic Atlas of Human Admixture History

(2014) G. Hellenthal et al.   SCIENCE

Genomic replacement of nativeCobitis lutheriwith introducedC. tetralineatathrough a hybrid swarm following the artificial connection of river systems

(2014) Ye-Seul Kwan et al.   Ecology and Evolution

Characterization and Correction of Error in Genome-Wide IBD Estimation for Samples with Population Structure

(2013) Jean Morrison   GENETIC EPIDEMIOLOGY

Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium

(2013) P.-R. Loh et al.   GENETICS

How reliable are morphological and anatomical characters to distinguish European wildcats, domestic cats and their hybrids in France?

(2013) Sébastien Devillard et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Development of SNP markers identifying European wildcats, domestic cats, and their admixed progeny

(2013) B. Nussberger et al.   Molecular Ecology Resources

A Comparative Review of Dimension Reduction Methods in Approximate Bayesian Computation

(2013) M. G. B. Blum et al.   STATISTICAL SCIENCE

Constructing summary statistics for approximate Bayesian computation: semi-automatic approximate Bayesian computation

(2012) Paul Fearnhead et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

abc: an R package for approximate Bayesian computation (ABC)

(2012) Katalin Csilléry et al.   Methods in Ecology and Evolution

Adaptive Introgression across Species Boundaries in Heliconius Butterflies

(2012) Carolina Pardo-Diaz et al.   PLoS Genetics

Comparison of SNPs and microsatellites for assessing the genetic structure of chicken populations

(2011) C. Gärke et al.   ANIMAL GENETICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Colours of domestication

(2011) Michael Cieslak et al.   BIOLOGICAL REVIEWS

Estimating Contemporary Effective Population Size on the Basis of Linkage Disequilibrium in the Face of Migration

(2011) Robin S. Waples et al.   GENETICS

Bayesian estimation of genomic clines

(2011) ZACHARIAH GOMPERT et al.   MOLECULAR ECOLOGY

Multi-locus inference of population structure: a comparison between single nucleotide polymorphisms and microsatellites

(2010) R J Haasl et al.   HEREDITY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Defining and Mapping Mammalian Coat Pattern Genes: Multiple Genomic Regions Implicated in Domestic Cat Stripes and Spots

(2009) E. Eizirik et al.   GENETICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

From wild animals to domestic pets, an evolutionary view of domestication

(2009) C. A. Driscoll et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Non-linear regression models for Approximate Bayesian Computation

(2009) Michael G. B. Blum et al.   STATISTICS AND COMPUTING

Landscape features affect gene flow of Scottish Highland red deer (Cervus elaphus)

(2008) S. PÉREZ-ESPONA et al.   MOLECULAR ECOLOGY

Detecting hybridization between wild species and their domesticated relatives

(2007) ETTORE RANDI   MOLECULAR ECOLOGY

The role of hybridization in evolution

(2003) N. H. Barton   MOLECULAR ECOLOGY