MinION technology for microbiome sequencing applications for the conservation of cultural heritage

Rapid diagnosis of biological colonization in cultural artefacts using the MinION nanopore sequencing technology

(2020) Guadalupe Piñar et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

DNA extraction of microbial DNA directly from infected tissue: an optimized protocol for use in nanopore sequencing

(2020) Karin Helmersen et al.   Scientific Reports

A preliminary study on the potential of Nanopore MinION and Illumina MiSeq 16S rRNA gene sequencing to characterize building-dust microbiomes

(2020) Anders B. Nygaard et al.   Scientific Reports

Off Earth Identification of Bacterial Populations Using 16S rDNA Nanopore Sequencing

(2020) Aaron S. Burton et al.   Genes

A pipeline for targeted metagenomics of environmental bacteria

(2020) Anissa Grieb et al.   Microbiome

Nanopore Sequencing and Bioinformatics for Rapidly Identifying Cultural Heritage Spoilage Microorganisms

(2020) Alessandro Grottoli et al.   Frontiers in Materials

DNA Barcoding of Nematodes Using the MinION

(2020) Ineke E. Knot et al.   Frontiers in Ecology and Evolution

Bacterial Calcium Carbonate Mineralization in situ Strategies for Conservation of Stone Artworks: From Cell Components to Microbial Community

(2020) Massimiliano Marvasi et al.   Frontiers in Microbiology

Biodeteriogens Characterization and Molecular Analyses of Diverse Funeral Accessories from XVII Century

(2020) Zuzana Kisová et al.   Applied Sciences-Basel

The Microbiome of Leonardo da Vinci’s Drawings: A Bio-Archive of Their History

(2020) Guadalupe Piñar et al.   Frontiers in Microbiology

A time travel story: metagenomic analyses decipher the unknown geographical shift and the storage history of possibly smuggled antique marble statues

(2019) Guadalupe Piñar et al.   ANNALS OF MICROBIOLOGY

Tree Lab: Portable genomics for Early Detection of Plant Viruses and Pests in Sub-Saharan Africa

(2019) Boykin et al.   Genes

Omics technologies for an in-depth investigation of biodeterioration of cultural heritage

(2019) Massimiliano Marvasi et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies

(2019) Volkan Sevim et al.   Scientific Data

Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens

(2019) Richard M. Leggett et al.   Nature Microbiology

Vapourised hydrogen peroxide (VHP) and ethylene oxide (EtO) methods for disinfecting historical cotton textiles from the Auschwitz-Birkenau State Museum in Oświęcim, Poland

(2018) Wawrzyk Anna et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

First evaluation of the microbiome of built cultural heritage by using the Ion Torrent next generation sequencing platform

(2018) Justyna Adamiak et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Comparison of methods for identification of microbial communities in book collections: Culture-dependent (sequencing and MALDI-TOF MS) and culture-independent (Illumina MiSeq)

(2018) Lucia Kraková et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

A new insight into lead (II) tolerance of environmental fungi based on a study of Aspergillus niger and Penicillium oxalicum

(2018) Da Tian et al.   ENVIRONMENTAL MICROBIOLOGY

Mycobiome diversity: high-throughput sequencing and identification of fungi

(2018) R. Henrik Nilsson et al.   NATURE REVIEWS MICROBIOLOGY

Genomic and Transcriptomic Insights into Calcium Carbonate Biomineralization by Marine Actinobacterium Brevibacterium linens BS258

(2017) Yuying Zhu et al.   Frontiers in Microbiology

Profiling bacterial communities by MinION sequencing of ribosomal operons

(2017) Lee J. Kerkhof et al.   Microbiome

Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies

(2016) Daryl M Gohl et al.   NATURE BIOTECHNOLOGY

Oxford Nanopore MinION Sequencing and Genome Assembly

(2016) Hengyun Lu et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Pitfalls of haplotype phasing from amplicon-based long-read sequencing

(2016) Thomas W. Laver et al.   Scientific Reports

Microbial communities affecting albumen photography heritage: a methodological survey

(2016) Andrea Puškárová et al.   Scientific Reports

Initial insights into bacterial succession during human decomposition

(2014) Embriette R. Hyde et al.   INTERNATIONAL JOURNAL OF LEGAL MEDICINE

Application of calcifying bacteria for remediation of stones and cultural heritages

(2014) Navdeep Kaur Dhami et al.   Frontiers in Microbiology

Disclosing a crypt: Microbial diversity and degradation activity of the microflora isolated from funeral clothes of Cardinal Peter Pázmány

(2013) Domenico Pangallo et al.   MICROBIOLOGICAL RESEARCH

Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences

(2012) David A W Soergel et al.   ISME Journal

Effect of ureolytic bacteria on concrete properties

(2011) Rafat Siddique et al.   CONSTRUCTION AND BUILDING MATERIALS

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

An integrated semiconductor device enabling non-optical genome sequencing

(2011) Jonathan M. Rothberg et al.   NATURE