Nonrefoldability is Pervasive Across the E. coli Proteome

Proteins are Solitary! Pathways of Protein Folding and Aggregation in Protein Mixtures

(2019) Valentino Bianco et al.   Journal of Physical Chemistry Letters

The Benefits of Cotranslational Assembly: A Structural Perspective

(2019) Andre Schwarz et al.   TRENDS IN CELL BIOLOGY

A Map of Protein-Metabolite Interactions Reveals Principles of Chemical Communication

(2018) Ilaria Piazza et al.   CELL

Kinetic Trapping of Folded Proteins Relative to Aggregates under Physiologically Relevant Conditions

(2018) Angela Elizabeth Varela et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Cotranslational assembly of protein complexes in eukaryotes revealed by ribosome profiling

(2018) Ayala Shiber et al.   NATURE

The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver

(2018) Arun Prasad Pandurangan et al.   NUCLEIC ACIDS RESEARCH

Reversible Unfolding and Folding of the Metalloprotein Ferredoxin Revealed by Single-Molecule Atomic Force Microscopy

(2017) Hai Lei et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Measuring protein structural changes on a proteome-wide scale using limited proteolysis-coupled mass spectrometry

(2017) Simone Schopper et al.   Nature Protocols

Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability

(2017) Pascal Leuenberger et al.   SCIENCE

A Systematic Protein Refolding Screen Method using the DGR Approach Reveals that Time and Secondary TSA are Essential Variables

(2017) Yuanze Wang et al.   Scientific Reports

Proteome- pI : proteome isoelectric point database

(2016) Lukasz P. Kozlowski   NUCLEIC ACIDS RESEARCH

The EcoCyc database: reflecting new knowledge aboutEscherichia coliK-12

(2016) Ingrid M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Roles for Synonymous Codon Usage in Protein Biogenesis

(2015) Julie L. Chaney et al.   Annual Review of Biophysics

Operon structure and cotranslational subunit association direct protein assembly in bacteria

(2015) Y.-W. Shieh et al.   SCIENCE

Principles of assembly reveal a periodic table of protein complexes

(2015) S. E. Ahnert et al.   SCIENCE

Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources

(2014) Gene-Wei Li et al.   CELL

Global analysis of protein structural changes in complex proteomes

(2014) Yuehan Feng et al.   NATURE BIOTECHNOLOGY

Molecular Chaperone Functions in Protein Folding and Proteostasis

(2013) Yujin E. Kim et al.   Annual Review of Biochemistry

Folding the proteome

(2013) Esther Braselmann et al.   TRENDS IN BIOCHEMICAL SCIENCES

Single-molecule fluorescence reveals sequence-specific misfolding in multidomain proteins

(2011) Madeleine B. Borgia et al.   NATURE

Behind the folding funnel diagram

(2011) Martin Karplus   Nature Chemical Biology

A systematic survey of in vivo obligate chaperonin-dependent substrates

(2010) Kei Fujiwara et al.   EMBO JOURNAL

Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of Escherichia coli proteins

(2009) T. Niwa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Protein Folding Problem

(2008) Ken A. Dill et al.   Annual Review of Biophysics

KineticDB: a database of protein folding kinetics

(2008) N. S. Bogatyreva et al.   NUCLEIC ACIDS RESEARCH