Differences in Gluco and Galacto Substrate-Binding Interactions in a Dual 6Pβ-Glucosidase/6Pβ-Galactosidase Glycoside Hydrolase 1 Enzyme from Bacillus licheniformis

Engineering Bacillus for efficient production of heterologous protein: current progress, challenge and prospect

(2019) Dongbo Cai et al.   JOURNAL OF APPLIED MICROBIOLOGY

Unraveling the specific regulation of the shikimate pathway for tyrosine accumulation in Bacillus licheniformis

(2019) Yinbiao Xu et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Engineering a newly isolated Bacillus licheniformis strain for the production of (2R,3R)-butanediol

(2019) Chan Woo Song et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Evaluation of antiviral activity of Bacillus licheniformis-fermented products against porcine epidemic diarrhea virus

(2019) Ju-Yi Peng et al.   AMB Express

A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core

(2018) Lukas Zimmermann et al.   JOURNAL OF MOLECULAR BIOLOGY

GenBank

(2018) Eric W Sayers et al.   NUCLEIC ACIDS RESEARCH

Structural basis for enzyme bifunctionality - the case of Gan1D from Geobacillus stearothermophilus

(2017) Shifra Lansky et al.   FEBS Journal

Large-Scale Analysis of Hydrogen Bond Interaction Patterns in Protein–Ligand Interfaces

(2017) Eva Nittinger et al.   JOURNAL OF MEDICINAL CHEMISTRY

Dynamic Docking: A Paradigm Shift in Computational Drug Discovery

(2017) Dario Gioia et al.   MOLECULES

Vina-Carb: Improving Glycosidic Angles during Carbohydrate Docking

(2016) Anita K. Nivedha et al.   Journal of Chemical Theory and Computation

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

PRIMO: An Interactive Homology Modeling Pipeline

(2016) Rowan Hatherley et al.   PLoS One

ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB

(2015) James A. Maier et al.   Journal of Chemical Theory and Computation

Reaction Mechanisms in Carbohydrate-Active Enzymes: Glycoside Hydrolases and Glycosyltransferases. Insights from ab Initio Quantum Mechanics/Molecular Mechanics Dynamic Simulations

(2015) Albert Ardèvol et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The MEME Suite

(2015) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography

(2015) Qun Wan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human, vector and parasite Hsp90 proteins: A comparative bioinformatics analysis

(2015) Ngonidzashe Faya et al.   FEBS Open Bio

g_mmpbsa—A GROMACS Tool for High-Throughput MM-PBSA Calculations

(2014) Rashmi Kumari et al.   Journal of Chemical Information and Modeling

Using Unnatural Amino Acids to Probe the Energetics of Oxyanion Hole Hydrogen Bonds in the Ketosteroid Isomerase Active Site

(2014) Aditya Natarajan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The Bacterial Phosphoenolpyruvate:Carbohydrate Phosphotransferase System: Regulation by Protein Phosphorylation and Phosphorylation-Dependent Protein-Protein Interactions

(2014) Josef Deutscher et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Polypharmacology rescored: Protein–ligand interaction profiles for remote binding site similarity assessment

(2014) Sebastian Salentin et al.   PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY

GH1-family 6-P-β-glucosidases from human microbiome lactic acid bacteria

(2013) Karolina Michalska et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Structural Insights into the Substrate Specificity of a 6-Phospho-β-glucosidase BglA-2 fromStreptococcus pneumoniaeTIGR4

(2013) Wei-Li Yu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data

(2013) Daniel R. Roe et al.   Journal of Chemical Theory and Computation

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Characterization of Domain–Peptide Interaction Interface: Prediction of SH3 Domain-Mediated Protein–Protein Interaction Network in Yeast by Generic Structure-Based Models

(2012) Tingjun Hou et al.   JOURNAL OF PROTEOME RESEARCH

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS): an interface between energy and signal transduction

(2012) Bernhard Erni   Journal of the Iranian Chemical Society

H++ 3.0: automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations

(2012) R. Anandakrishnan et al.   NUCLEIC ACIDS RESEARCH

The phosphoenolpyruvate-dependent glucose–phosphotransferase system from Escherichia coli K-12 as the center of a network regulating carbohydrate flux in the cell

(2011) Elisabeth Gabor et al.   EUROPEAN JOURNAL OF CELL BIOLOGY

Enzyme Promiscuity: A Mechanistic and Evolutionary Perspective

(2010) Olga Khersonsky and Dan S. Tawfik   Annual Review of Biochemistry

Role of the Key Mutation in the Selective Binding of Avian and Human Influenza Hemagglutinin to Sialosides Revealed by Quantum-Mechanical Calculations

(2010) Toshihiko Sawada et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

QMEAN server for protein model quality estimation

(2009) Pascal Benkert et al.   NUCLEIC ACIDS RESEARCH

Computational analysis of glycoside hydrolase family 1 specificities

(2008) Anthony D. Hill et al.   BIOPOLYMERS

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION