标题
PRIMO: An Interactive Homology Modeling Pipeline
作者
关键词
Sequence alignment, BLAST algorithm, Multiple alignment calculation, Protein structure comparison, Web-based applications, Protein structure, Protein structure prediction, Proteomic databases
出版物
PLoS One
Volume 11, Issue 11, Pages e0166698
出版商
Public Library of Science (PLoS)
发表日期
2016-11-18
DOI
10.1371/journal.pone.0166698
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Cryo-Electron Microscopy and the Amazing Race to Atomic Resolution
- (2015) Elad Binshtein et al. BIOCHEMISTRY
- H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa
- (2015) Nicola J. Mulder et al. GENOME RESEARCH
- The Phyre2 web portal for protein modeling, prediction and analysis
- (2015) Lawrence A Kelley et al. Nature Protocols
- I-TASSER server: new development for protein structure and function predictions
- (2015) Jianyi Yang et al. NUCLEIC ACIDS RESEARCH
- JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing
- (2015) David K. Brown et al. PLoS One
- Structural Bioinformatics of the Interactome
- (2014) Donald Petrey et al. Annual Review of Biophysics
- SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information
- (2014) Marco Biasini et al. NUCLEIC ACIDS RESEARCH
- Enabling the genomic revolution in Africa
- (2014) et al. SCIENCE
- lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests
- (2013) Valerio Mariani et al. BIOINFORMATICS
- A quality metric for homology modeling: the H-factor
- (2013) Eric di Luccio et al. BMC BIOINFORMATICS
- Template-based structure modeling of protein–protein interactions
- (2013) Andras Szilagyi et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- ModBase, a database of annotated comparative protein structure models and associated resources
- (2013) Ursula Pieper et al. NUCLEIC ACIDS RESEARCH
- Protein Modeling: What Happened to the “Protein Structure Gap”?
- (2013) Torsten Schwede STRUCTURE
- The Protein Model Portal—a comprehensive resource for protein structure and model information
- (2013) Juergen Haas et al. Database-The Journal of Biological Databases and Curation
- Study of protein complexes via homology modeling, applied to cysteine proteases and their protein inhibitors
- (2011) Özlem Tastan Bishop et al. JOURNAL OF MOLECULAR MODELING
- Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
- (2011) F. Sievers et al. Molecular Systems Biology
- Protein Folding Requires Crowd Control in a Simulated Cell
- (2010) Benjamin R. Jefferys et al. JOURNAL OF MOLECULAR BIOLOGY
- 3DLigandSite: predicting ligand-binding sites using similar structures
- (2010) Mark N. Wass et al. NUCLEIC ACIDS RESEARCH
- Protein structure prediction: when is it useful?
- (2009) Yang Zhang CURRENT OPINION IN STRUCTURAL BIOLOGY
- Structure is three to ten times more conserved than sequence-A study of structural response in protein cores
- (2009) Kristoffer Illergård et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Progress and challenges in protein structure prediction
- (2008) Yang Zhang CURRENT OPINION IN STRUCTURAL BIOLOGY
- PROMALS3D: a tool for multiple protein sequence and structure alignments
- (2008) Jimin Pei et al. NUCLEIC ACIDS RESEARCH
- QMEAN: A comprehensive scoring function for model quality assessment
- (2007) Pascal Benkert et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started