Structural basis of PETISCO complex assembly during piRNA biogenesis in C. elegans

The RNA polymerase II subunit RPB‐9 recruits the integrator complex to terminate Caenorhabditis elegans piRNA transcription

(2021) Ahmet C Berkyurek et al.   EMBO JOURNAL

Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex

(2021) Jakob Schnabl et al.   GENES & DEVELOPMENT

Formation of S. pombe Erh1 homodimer mediates gametogenic gene silencing and meiosis progression

(2020) Ditipriya Hazra et al.   Scientific Reports

MicroRNA Clustering Assists Processing of Suboptimal MicroRNA Hairpins through the Action of the ERH Protein

(2020) Wenwen Fang et al.   MOLECULAR CELL

A tale of non-canonical tails: gene regulation by post-transcriptional RNA tailing

(2020) Sha Yu et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Structural basis of UCUU RNA motif recognition by splicing factor RBM20

(2020) Santosh Kumar Upadhyay et al.   NUCLEIC ACIDS RESEARCH

SAFB2 Enables the Processing of Suboptimal Stem-Loop Structures in Clustered Primary miRNA Transcripts

(2020) Katharina Hutter et al.   MOLECULAR CELL

ERH facilitates microRNA maturation through the interaction with the N-terminus of DGCR8

(2020) S Chul Kwon et al.   NUCLEIC ACIDS RESEARCH

Integrator is recruited to promoter‐proximally paused RNA Pol II to generate Caenorhabditis elegans piRNA precursors

(2020) Toni Beltran et al.   EMBO JOURNAL

Structure of the human core transcription-export complex reveals a hub for multivalent interactions

(2020) Thomas Pühringer et al.   eLife

Structural insights into the nucleic acid remodeling mechanisms of the yeast THO-Sub2 complex

(2020) Sandra K Schuller et al.   eLife

A conserved dimer interface connects ERH and YTH family proteins to promote gene silencing

(2019) Guodong Xie et al.   Nature Communications

Molecular basis for AU-rich element recognition and dimerization by the HuR C-terminal RRM

(2019) Nina Ripin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Epigenomics Reveals that RNA Polymerase II Pausing and Chromatin Domain Organization Control Nematode piRNA Biogenesis

(2019) Toni Beltran et al.   DEVELOPMENTAL CELL

Improving the sensitivity of FT-NMR spectroscopy by apodization weighted sampling

(2019) Bernd Simon et al.   JOURNAL OF BIOMOLECULAR NMR

PETISCO is a novel protein complex required for 21U RNA biogenesis and embryonic viability

(2019) Ricardo J. Cordeiro Rodrigues et al.   GENES & DEVELOPMENT

Functional Proteomics Identifies a PICS Complex Required for piRNA Maturation and Chromosome Segregation

(2019) Chenming Zeng et al.   Cell Reports

CCP4i2: the new graphical user interface to the CCP4 program suite

(2018) Liz Potterton et al.   Acta Crystallographica Section D-Structural Biology

Overview of refinement procedures within REFMAC5: utilizing data from different sources

(2018) Oleg Kovalevskiy et al.   Acta Crystallographica Section D-Structural Biology

The USTC co-opts an ancient machinery to drive piRNA transcription in C. elegans

(2018) Chenchun Weng et al.   GENES & DEVELOPMENT

PIWI-interacting RNAs: small RNAs with big functions

(2018) Deniz M. Ozata et al.   NATURE REVIEWS GENETICS

HuR biological function involves RRM3-mediated dimerization and RNA binding by all three RRMs

(2018) Marta Pabis et al.   NUCLEIC ACIDS RESEARCH

Enhancer of rudimentary homologue interacts with scaffold attachment factor B at the nuclear matrix to regulate SR protein phosphorylation

(2017) Sotiria Drakouli et al.   FEBS Journal

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

(2017) Thomas D. Goddard et al.   PROTEIN SCIENCE

MolProbity: More and better reference data for improved all-atom structure validation

(2017) Christopher J. Williams et al.   PROTEIN SCIENCE

The RNase PARN-1 Trims piRNA 3′ Ends to Promote Transcriptome Surveillance in C. elegans

(2016) Wen Tang et al.   CELL

Enhancer of Rudimentary Cooperates with Conserved RNA-Processing Factors to Promote Meiotic mRNA Decay and Facultative Heterochromatin Assembly

(2016) Tomoyasu Sugiyama et al.   MOLECULAR CELL

One Loop to Rule Them All: The Ping-Pong Cycle and piRNA-Guided Silencing

(2016) Benjamin Czech et al.   TRENDS IN BIOCHEMICAL SCIENCES

Mextli proteins use both canonical bipartite and novel tripartite binding modes to form eIF4E complexes that display differential sensitivity to 4E-BP regulation

(2015) Daniel Peter et al.   GENES & DEVELOPMENT

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

Structural basis underlying CAC RNA recognition by the RRM domain of dimeric RNA-binding protein RBPMS

(2015) Marianna Teplova et al.   QUARTERLY REVIEWS OF BIOPHYSICS

NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy

(2014) Woonghee Lee et al.   BIOINFORMATICS

piRNAs: from biogenesis to function

(2014) E.-M. Weick et al.   DEVELOPMENT

The C. elegans SNAPc Component SNPC-4 Coats piRNA Domains and Is Globally Required for piRNA Abundance

(2014) Dionna M. Kasper et al.   DEVELOPMENTAL CELL

PRDE-1 is a nuclear factor essential for the biogenesis of Ruby motif-dependent piRNAs in C. elegans

(2014) E.-M. Weick et al.   GENES & DEVELOPMENT

PID-1 is a novel factor that operates during 21U-RNA biogenesis in Caenorhabditis elegans

(2014) B. F. M. de Albuquerque et al.   GENES & DEVELOPMENT

A genome-wide RNAi screen identifies factors required for distinct stages of C. elegans piRNA biogenesis

(2014) W.-S. S. Goh et al.   GENES & DEVELOPMENT

Decision making inxia2

(2013) Graeme Winter et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PIWI-interacting RNAs: from generation to transgenerational epigenetics

(2013) Maartje J. Luteijn et al.   NATURE REVIEWS GENETICS

Using chemical shift perturbation to characterise ligand binding

(2013) Mike P. Williamson   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

The enigmatic ERH protein: its role in cell cycle, RNA splicing and cancer

(2013) Meng-Tzu Weng et al.   Protein & Cell

PDB_REDO: constructive validation, more than just looking for errors

(2012) Robbie P. Joosten et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Towards automated crystallographic structure refinement withphenix.refine

(2012) Pavel V. Afonine et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

CapSeq and CIP-TAP Identify Pol II Start Sites and Reveal Capped Small RNAs as C. elegans piRNA Precursors

(2012) Weifeng Gu et al.   CELL

Identification of helix capping and β-turn motifs from NMR chemical shifts

(2012) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR

Promoters Recognized by Forkhead Proteins Exist for Individual 21U-RNAs

(2012) Germano Cecere et al.   MOLECULAR CELL

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

An Efficient Protocol for NMR-Spectroscopy-Based Structure Determination of Protein Complexes in Solution

(2010) Bernd Simon et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

RNA Processing and Export

(2010) S. Hocine et al.   Cold Spring Harbor Perspectives in Biology

Decision-making in structure solution using Bayesian estimates of map quality: thePHENIX AutoSolwizard

(2009) Thomas C. Terwilliger et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

A C. elegans Piwi, PRG-1, Regulates 21U-RNAs during Spermatogenesis

(2008) Guilin Wang et al.   CURRENT BIOLOGY

Piwi and piRNAs Act Upstream of an Endogenous siRNA Pathway to Suppress Tc3 Transposon Mobility in the Caenorhabditis elegans Germline

(2008) Partha P. Das et al.   MOLECULAR CELL

PRG-1 and 21U-RNAs Interact to Form the piRNA Complex Required for Fertility in C. elegans

(2008) Pedro J. Batista et al.   MOLECULAR CELL

PROMALS3D: a tool for multiple protein sequence and structure alignments

(2008) Jimin Pei et al.   NUCLEIC ACIDS RESEARCH