Metabolic potentials of members of the class Acidobacteriia in metal‐contaminated soils revealed by metagenomic analysis
出版年份 2021 全文链接
标题
Metabolic potentials of members of the class
Acidobacteriia
in metal‐contaminated soils revealed by metagenomic analysis
作者
关键词
-
出版物
ENVIRONMENTAL MICROBIOLOGY
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2021-06-03
DOI
10.1111/1462-2920.15612
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Microbial diversity in soils from antimony mining sites: geochemical control promotes species enrichment
- (2020) Renjian Deng et al. Environmental Chemistry Letters
- Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data
- (2020) Jasmine Chong et al. Nature Protocols
- Bacterial response to sharp geochemical gradients caused by acid mine drainage intrusion in a terrace: Relevance of C, N, and S cycling and metal resistance
- (2020) Weimin Sun et al. ENVIRONMENT INTERNATIONAL
- Comparative characterization of microbial communities that inhabit arsenic-rich and antimony-rich contaminated sites: Responses to two different contamination conditions
- (2020) Xiaoxu Sun et al. ENVIRONMENTAL POLLUTION
- Microbial communities associated with methylmercury degradation in paddy soils
- (2020) Xin-Quan Zhou et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils
- (2020) Anastasia A. Ivanova et al. PLoS One
- The Great Oxidation Event expanded the genetic repertoire of arsenic metabolism and cycling
- (2020) Song-Can Chen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Impacts of antimony and arsenic co-contamination on the river sedimentary microbial community in an antimony-contaminated river
- (2020) Rui Xu et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Concentration, Spatial Distribution, Contamination Degree and Human Health Risk Assessment of Heavy Metals in Urban Soils across China between 2003 and 2019—A Systematic Review
- (2020) Shuangmei Tong et al. International Journal of Environmental Research and Public Health
- Uncovering microbial responses to sharp geochemical gradients in a terrace contaminated by acid mine drainage
- (2020) Rui Xu et al. ENVIRONMENTAL POLLUTION
- Investigation of the ecological roles of putative keystone taxa during tailing revegetation
- (2020) Xiaoxu Sun et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Microbial succession during the transition from active to inactive stages of deep-sea hydrothermal vent sulfide chimneys
- (2020) Jialin Hou et al. Microbiome
- Root-associated (rhizosphere and endosphere) microbiomes of the Miscanthus sinensis and their response to the heavy metal contamination
- (2020) Xiaoxu Sun et al. Journal of Environmental Sciences-China
- Mercury methylating microbial communities of boreal forest soils
- (2019) Jingying Xu et al. Scientific Reports
- Biogeochemical gold cycling selects metal-resistant bacteria that promote gold particle transformation
- (2019) Santonu Kumar Sanyal et al. FEMS MICROBIOLOGY ECOLOGY
- Insights into ecological role of a new deltaproteobacterial order Candidatus Acidulodesulfobacterales by metagenomics and metatranscriptomics
- (2019) Sha Tan et al. ISME Journal
- Interactive Tree Of Life (iTOL) v4: recent updates and new developments
- (2019) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Vegetation type impacts microbial interaction with antimony contaminants in a mining-contaminated soil environment
- (2019) Xiaoxu Sun et al. ENVIRONMENTAL POLLUTION
- Organic loading rate and hydraulic retention time shape distinct ecological networks of anaerobic digestion related microbiome
- (2018) Rui Xu et al. BIORESOURCE TECHNOLOGY
- DNA-SIP Reveals the Diversity of Chemolithoautotrophic Bacteria Inhabiting Three Different Soil Types in Typical Karst Rocky Desertification Ecosystems in Southwest China
- (2018) Baoqin Li et al. MICROBIAL ECOLOGY
- Keystone taxa as drivers of microbiome structure and functioning
- (2018) Samiran Banerjee et al. NATURE REVIEWS MICROBIOLOGY
- Metagenomic binning reveals the functional roles of core abundant microorganisms in twelve full-scale biogas plants
- (2018) Stefano Campanaro et al. WATER RESEARCH
- A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
- (2018) Donovan H Parks et al. NATURE BIOTECHNOLOGY
- MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis
- (2018) Gherman V. Uritskiy et al. Microbiome
- Bacterial Survival Strategies in an Alkaline Tailing Site and the Physiological Mechanisms of Dominant Phylotypes As Revealed by Metagenomic Analyses
- (2018) Weimin Sun et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Unraveling Microbial Communities Associated with Methylmercury Production in Paddy Soils
- (2018) Yu-Rong Liu et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Refining the taxonomic structure of the phylum Acidobacteria
- (2018) Svetlana N. Dedysh et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Linking Genes to Microbial Biogeochemical Cycling: Lessons from Arsenic
- (2017) Yong-Guan Zhu et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data
- (2017) Achal Dhariwal et al. NUCLEIC ACIDS RESEARCH
- The Ecological Role of Volatile and Soluble Secondary Metabolites Produced by Soil Bacteria
- (2017) Olaf Tyc et al. TRENDS IN MICROBIOLOGY
- Soil Acidification Aggravates the Occurrence of Bacterial Wilt in South China
- (2017) Shili Li et al. Frontiers in Microbiology
- Bacterial chromate reduction: A review of important genomic, proteomic, and bioinformatic analysis
- (2016) Sukanta Kumar Pradhan et al. CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY
- Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil
- (2016) Samiran Banerjee et al. SOIL BIOLOGY & BIOCHEMISTRY
- The Ecology of Acidobacteria: Moving beyond Genes and Genomes
- (2016) Anna M. Kielak et al. Frontiers in Microbiology
- Microbial mercury methylation in Antarctic sea ice
- (2016) Caitlin M. Gionfriddo et al. Nature Microbiology
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- A Bacillus subtilis strain can reduce hexavalent chromium to trivalent and an nfrA gene is involved
- (2015) Zhe Zheng et al. INTERNATIONAL BIODETERIORATION & BIODEGRADATION
- eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
- (2015) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- The ecology of the microbiome: Networks, competition, and stability
- (2015) K. Z. Coyte et al. SCIENCE
- Global prevalence and distribution of genes and microorganisms involved in mercury methylation
- (2015) M. Podar et al. Science Advances
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Ecological roles of dominant and rare prokaryotes in acid mine drainage revealed by metagenomics and metatranscriptomics
- (2014) Zheng-Shuang Hua et al. ISME Journal
- Binning metagenomic contigs by coverage and composition
- (2014) Johannes Alneberg et al. NATURE METHODS
- Investigation on mechanism of Cr(VI) reduction and removal by Bacillus amyloliquefaciens, a novel chromate tolerant bacterium isolated from chromite mine soil
- (2013) Sasmita Das et al. CHEMOSPHERE
- Escherichia coli NemA Is an Efficient Chromate Reductase That Can Be Biologically Immobilized to Provide a Cell Free System for Remediation of Hexavalent Chromium
- (2013) Katherine J. Robins et al. PLoS One
- The Genetic Basis for Bacterial Mercury Methylation
- (2013) J. M. Parks et al. SCIENCE
- A review of soil heavy metal pollution from mines in China: Pollution and health risk assessment
- (2013) Zhiyuan Li et al. SCIENCE OF THE TOTAL ENVIRONMENT
- PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
- (2013) Nicola Segata et al. Nature Communications
- Complete genome sequence of Granulicella mallensis type strain MP5ACTX8T, an acidobacterium from tundra soil
- (2013) Suman R. Rawat et al. Standards in Genomic Sciences
- Environmental Factors Affect Acidobacterial Communities below the Subgroup Level in Grassland and Forest Soils
- (2012) Astrid Naether et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Experimental in Situ Transformation of Pb Smelter Fly Ash in Acidic Soils
- (2012) Vojtěch Ettler et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Acidobacteriadominate the active bacterial communities of Arctic tundra with widely divergent winter-time snow accumulation and soil temperatures
- (2012) Minna K. Männistö et al. FEMS MICROBIOLOGY ECOLOGY
- Acidobacterial community responses to agricultural management of soybean in Amazon forest soils
- (2012) Acácio A. Navarrete et al. FEMS MICROBIOLOGY ECOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Exposure of Soil Microbial Communities to Chromium and Arsenic Alters Their Diversity and Structure
- (2012) Cody S. Sheik et al. PLoS One
- The Mercury Resistance Operon: From an Origin in a Geothermal Environment to an Efficient Detoxification Machine
- (2012) Eric S. Boyd et al. Frontiers in Microbiology
- Bacteriocin Production: a Probiotic Trait?
- (2011) Alleson Dobson et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Chromium resistance strategies and toxicity: what makes Ochrobactrum tritici 5bvl1 a strain highly resistant
- (2011) Paula Vasconcelos Morais et al. BIOMETALS
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Isolation and Characterization of Hexavalent Chromium-Reducing Rhizospheric Bacteria From a Wetland
- (2010) Amparo Mauricio Gutiérrez et al. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- A putative azoreductase gene is involved in the Shewanella oneidensis response to heavy metal stress
- (2009) Irina Mugerfeld et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses
- (2009) Ryan T Jones et al. ISME Journal
- Heavy metals and soil microbes
- (2009) Ken E. Giller et al. SOIL BIOLOGY & BIOCHEMISTRY
- Expression of chromate resistance genes fromShewanellasp. strain ANA-3 inEscherichia coli
- (2008) Esther Aguilar-Barajas et al. FEMS MICROBIOLOGY LETTERS
- The influence of soil properties on the structure of bacterial and fungal communities across land-use types
- (2008) Christian L. Lauber et al. SOIL BIOLOGY & BIOCHEMISTRY
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started