Implications of 2D versus 3D surveys to measure the abundance and composition of benthic coral reef communities

Unveiling hidden sponge biodiversity within the Hawaiian reef cryptofauna

(2021) Jan Vicente et al.   CORAL REEFS

Will Coral Reef Sponges be Winners in the Anthropocene?

(2020) Michael P. Lesser et al.   GLOBAL CHANGE BIOLOGY

The BenBioDen database, a global database for meio-, macro- and megabenthic biomass and densities

(2020) Tanja Stratmann et al.   Scientific Data

Capturing complexity: field-testing the use of ‘structure from motion’ derived virtual models to replicate standard measures of reef physical structure

(2019) Daniel T.I. Bayley et al.   PeerJ

The systematics of Lobophora (Dictyotales, Phaeophyceae) in the western Atlantic and eastern Pacific oceans: eight new species

(2019) Olga Camacho et al.   JOURNAL OF PHYCOLOGY

The Emerging Ecological and Biogeochemical Importance of Sponges on Coral Reefs

(2019) Joseph R. Pawlik et al.   Annual Review of Marine Science

A 3D perspective on sediment accumulation in algal turfs: Implications of coral reef flattening

(2019) Sterling B. Tebbett et al.   JOURNAL OF ECOLOGY

Depth‐dependent detritus production in the sponge, Halisarca caerulea

(2019) Michael P. Lesser et al.   LIMNOLOGY AND OCEANOGRAPHY

On the prevalence and dynamics of inverted trophic pyramids and otherwise top-heavy communities

(2018) Douglas J. McCauley et al.   ECOLOGY LETTERS

A test of the sponge-loop hypothesis for emergent Caribbean reef sponges

(2018) SE McMurray et al.   MARINE ECOLOGY PROGRESS SERIES

The role of the reef flat in coral reef trophodynamics: Past, present, and future

(2018) David R. Bellwood et al.   Ecology and Evolution

A test of the sponge-loop hypothesis for emergent Caribbean reef sponges

(2018) SE McMurray et al.   MARINE ECOLOGY PROGRESS SERIES

Interactive effects of herbivory and substrate orientation on algal community dynamics on a coral reef

(2018) Alain Duran et al.   MARINE BIOLOGY

Characterization of measurement errors using structure-from-motion and photogrammetry to measure marine habitat structural complexity

(2017) Mitch Bryson et al.   Ecology and Evolution

End of the chain? Rugosity and fine-scale bathymetry from existing underwater digital imagery using structure-from-motion (SfM) technology

(2016) Curt D. Storlazzi et al.   CORAL REEFS

Quantifying Multiscale Habitat Structural Complexity: A Cost-Effective Framework for Underwater 3D Modelling

(2016) Renata Ferrari et al.   Remote Sensing

Coral reef fish and benthic community structure of Bonaire and Curaçao, Netherlands Antilles

(2016) Stuart A. Sandin et al.   CARIBBEAN JOURNAL OF SCIENCE

End to End Digitisation and Analysis of Three-Dimensional Coral Models, from Communities to Corallites

(2016) Luis Gutierrez-Heredia et al.   PLoS One

Coral mucus fuels the sponge loop in warm- and cold-water coral reef ecosystems

(2016) Laura Rix et al.   Scientific Reports

Measuring coral reef terrain roughness using ‘Structure-from-Motion’ close-range photogrammetry

(2015) J.X. Leon et al.   GEOMORPHOLOGY

Reef flattening effects on total richness and species responses in the Caribbean

(2015) Steven P. Newman et al.   JOURNAL OF ANIMAL ECOLOGY

DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity

(2015) Matthieu Leray et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A quick, easy and non-intrusive method for underwater volume and surface area evaluation of benthic organisms by 3D computer modelling

(2015) Adi Lavy et al.   Methods in Ecology and Evolution

High dissolved organic carbon release by benthic cyanobacterial mats in a Caribbean reef ecosystem

(2015) Hannah J. Brocke et al.   Scientific Reports

Accuracy and Precision of Habitat Structural Complexity Metrics Derived from Underwater Photogrammetry

(2015) Will Figueira et al.   Remote Sensing

Integrating structure-from-motion photogrammetry with geospatial software as a novel technique for quantifying 3D ecological characteristics of coral reefs

(2015) JHR Burns et al.   PeerJ

The Catlin Seaview Survey - kilometre-scale seascape assessment, and monitoring of coral reef ecosystems

(2014) Manuel González-Rivero et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Effect of light availability on dissolved organic carbon release by Caribbean reef algae and corals

(2014) B Mueller et al.   BULLETIN OF MARINE SCIENCE

Could some coral reefs become sponge reefs as our climate changes?

(2013) James J. Bell et al.   GLOBAL CHANGE BIOLOGY

Surviving in a Marine Desert: The Sponge Loop Retains Resources Within Coral Reefs

(2013) Jasper M. de Goeij et al.   SCIENCE

Interaction of herbivory and seasonality on the dynamics of Caribbean macroalgae

(2012) Renata Ferrari et al.   CORAL REEFS

Methods to quantify components of the excavating spongeCliona orientalisThiele, 1900

(2012) James K. H. Fang et al.   Marine Ecology-An Evolutionary Perspective

Facilitation of coral reef biodiversity and health by cave sponge communities

(2012) M Slattery et al.   MARINE ECOLOGY PROGRESS SERIES

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

The 27-year decline of coral cover on the Great Barrier Reef and its causes

(2012) G. De'ath et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Chemical Ecology of Sponges on Caribbean Reefs: Natural Products Shape Natural Systems

(2011) Joseph R. Pawlik   BIOSCIENCE

The effectiveness of different meso-scale rugosity metrics for predicting intra-habitat variation in coral-reef fish assemblages

(2011) Alastair R. Harborne et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Habitat complexity: approaches and future directions

(2011) Katya E. Kovalenko et al.   HYDROBIOLOGIA

Habitat complexity in aquatic systems: fractals and beyond

(2011) M. Tokeshi et al.   HYDROBIOLOGIA

The Roles of Dimensionality, Canopies and Complexity in Ecosystem Monitoring

(2011) Christopher H. R. Goatley et al.   PLoS One

The BIOMASS mission: Mapping global forest biomass to better understand the terrestrial carbon cycle

(2011) T. Le Toan et al.   REMOTE SENSING OF ENVIRONMENT

Increasing the accuracy of surface area estimation using single wax dipping of coral fragments

(2010) C. J. Veal et al.   CORAL REEFS

Organic matter release by coral reef associated benthic algae in the Northern Red Sea

(2010) Andreas F. Haas et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

SPECIES DELIMITATION, TAXONOMY, AND BIOGEOGRAPHY OF DICTYOTA IN EUROPE (DICTYOTALES, PHAEOPHYCEAE)1

(2010) Ana Tronholm et al.   JOURNAL OF PHYCOLOGY

Body composition in aquatic organisms — A global data bank of relationships between mass, elemental composition and energy content

(2010) Thomas Brey et al.   JOURNAL OF SEA RESEARCH

Coral surface area quantification–evaluation of established techniques by comparison with computer tomography

(2009) M. S. Naumann et al.   CORAL REEFS

Flattening of Caribbean coral reefs: region-wide declines in architectural complexity

(2009) L. Alvarez-Filip et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Baselines and Degradation of Coral Reefs in the Northern Line Islands

(2008) Stuart A. Sandin et al.   PLoS One

One-Third of Reef-Building Corals Face Elevated Extinction Risk from Climate Change and Local Impacts

(2008) K. E. Carpenter et al.   SCIENCE