The current state of the art of quantitative phosphoproteomics and its applications to diabetes research
出版年份 2016 全文链接
标题
The current state of the art of quantitative phosphoproteomics and its applications to diabetes research
作者
关键词
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出版物
Expert Review of Proteomics
Volume 13, Issue 4, Pages 421-433
出版商
Informa UK Limited
发表日期
2016-03-10
DOI
10.1586/14789450.2016.1164604
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Preserved DNA Damage Checkpoint Pathway Protects against Complications in Long-Standing Type 1 Diabetes
- (2015) Shweta Bhatt et al. Cell Metabolism
- Understanding the Cellular and Molecular Mechanisms of Physical Activity-Induced Health Benefits
- (2015) P. Darrell Neufer et al. Cell Metabolism
- In-depth analyses of B cell signaling through tandem mass spectrometry of phosphopeptides enriched by PolyMAC
- (2015) Anton Iliuk et al. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY
- Quantitative Phosphoproteomics Revealed Glucose-Stimulated Responses of Islet Associated with Insulin Secretion
- (2015) Jiaming Li et al. JOURNAL OF PROTEOME RESEARCH
- Signal Transduction Reaction Monitoring Deciphers Site-Specific PI3K-mTOR/MAPK Pathway Dynamics in Oncogene-Induced Senescence
- (2015) Erik L. de Graaf et al. JOURNAL OF PROTEOME RESEARCH
- Cytometry-based single-cell analysis of intact epithelial signaling reveals MAPK activation divergent from TNF- -induced apoptosis in vivo
- (2015) A. J. Simmons et al. Molecular Systems Biology
- High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics
- (2015) Sean J Humphrey et al. NATURE BIOTECHNOLOGY
- Identifying novel targets of oncogenic EGF receptor signaling in lung cancer through global phosphoproteomics
- (2015) Xu Zhang et al. PROTEOMICS
- Targeted phosphoproteomics of insulin signaling using data-independent acquisition mass spectrometry
- (2015) Benjamin L. Parker et al. Science Signaling
- An Augmented Multiple-Protease-Based Human Phosphopeptide Atlas
- (2015) Piero Giansanti et al. Cell Reports
- Targeted phosphoproteomics of insulin signaling using data-independent acquisition mass spectrometry
- (2015) Benjamin L. Parker et al. Science Signaling
- Sensitive Targeted Quantification of ERK Phosphorylation Dynamics and Stoichiometry in Human Cells without Affinity Enrichment
- (2014) Tujin Shi et al. ANALYTICAL CHEMISTRY
- MultiNotch MS3 Enables Accurate, Sensitive, and Multiplexed Detection of Differential Expression across Cancer Cell Line Proteomes
- (2014) Graeme C. McAlister et al. ANALYTICAL CHEMISTRY
- Oligomer Formation of Tau Protein Hyperphosphorylated in Cells
- (2014) Katharina Tepper et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Protein phosphatases in pancreatic islets
- (2014) Henrik Ortsäter et al. JOURNAL OF ENDOCRINOLOGY
- Off-Line High-pH Reversed-Phase Fractionation for In-Depth Phosphoproteomics
- (2014) Tanveer S. Batth et al. JOURNAL OF PROTEOME RESEARCH
- Quantitative phosphoproteomics reveals novel phosphorylation events in insulin signaling regulated by protein phosphatase 1 regulatory subunit 12A
- (2014) Xiangmin Zhang et al. Journal of Proteomics
- Hypoxia-induced p38 MAPK activation reduces Mcl-1 expression and facilitates sensitivity towards BH3 mimetics in chronic lymphocytic leukemia
- (2014) M F Huelsemann et al. LEUKEMIA
- Single-step Enrichment by Ti4+-IMAC and Label-free Quantitation Enables In-depth Monitoring of Phosphorylation Dynamics with High Reproducibility and Temporal Resolution
- (2014) Erik L. de Graaf et al. MOLECULAR & CELLULAR PROTEOMICS
- Ischemia in Tumors Induces Early and Sustained Phosphorylation Changes in Stress Kinase Pathways but Does Not Affect Global Protein Levels
- (2014) Philipp Mertins et al. MOLECULAR & CELLULAR PROTEOMICS
- Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
- (2014) Jürgen Cox et al. MOLECULAR & CELLULAR PROTEOMICS
- Proteogenomic characterization of human colon and rectal cancer
- (2014) Bing Zhang et al. NATURE
- PhosphoSitePlus, 2014: mutations, PTMs and recalibrations
- (2014) Peter V. Hornbeck et al. NUCLEIC ACIDS RESEARCH
- Effects of MEK inhibitors GSK1120212 and PD0325901 in vivo using 10-plex quantitative proteomics and phosphoproteomics
- (2014) Joao A. Paulo et al. PROTEOMICS
- Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling
- (2014) Kirti Sharma et al. Cell Reports
- Roles of eIF2α kinases in the pathogenesis of Alzheimer’s disease
- (2014) Masuo Ohno Frontiers in Molecular Neuroscience
- Evaluation of quantitative performance of sequential immobilized metal affinity chromatographic enrichment for phosphopeptides
- (2013) Zeyu Sun et al. ANALYTICAL BIOCHEMISTRY
- Increasing Throughput in Targeted Proteomics Assays: 54-Plex Quantitation in a Single Mass Spectrometry Run
- (2013) Robert A. Everley et al. ANALYTICAL CHEMISTRY
- Sequential Phosphoproteomic Enrichment through Complementary Metal-Directed Immobilized Metal Ion Affinity Chromatography
- (2013) Chia-Feng Tsai et al. ANALYTICAL CHEMISTRY
- Phase I Study of Dovitinib (TKI258), an Oral FGFR, VEGFR, and PDGFR Inhibitor, in Advanced or Metastatic Renal Cell Carcinoma
- (2013) E. Angevin et al. CLINICAL CANCER RESEARCH
- Personalized Cancer Medicine: Molecular Diagnostics, Predictive biomarkers, and Drug Resistance
- (2013) D Gonzalez de Castro et al. CLINICAL PHARMACOLOGY & THERAPEUTICS
- Unambiguous Phosphosite Localization using Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)
- (2013) Christian K. Frese et al. JOURNAL OF PROTEOME RESEARCH
- The Coming of Age of Phosphoproteomics—from Large Data Sets to Inference of Protein Functions
- (2013) Philippe P. Roux et al. MOLECULAR & CELLULAR PROTEOMICS
- Quantitative Measurement of Phosphoproteome Response to Osmotic Stress inArabidopsisBased on Library-Assisted eXtracted Ion Chromatogram (LAXIC)
- (2013) Liang Xue et al. MOLECULAR & CELLULAR PROTEOMICS
- Integrated proteomic analysis of post-translational modifications by serial enrichment
- (2013) Philipp Mertins et al. NATURE METHODS
- Technologies and challenges in large-scale phosphoproteomics
- (2013) Kasper Engholm-Keller et al. PROTEOMICS
- In Vivo SILAC-Based Proteomics Reveals Phosphoproteome Changes during Mouse Skin Carcinogenesis
- (2013) Sara Zanivan et al. Cell Reports
- Consecutive Proteolytic Digestion in an Enzyme Reactor Increases Depth of Proteomic and Phosphoproteomic Analysis
- (2012) Jacek R. Wiśniewski et al. ANALYTICAL CHEMISTRY
- Toward Full Peptide Sequence Coverage by Dual Fragmentation Combining Electron-Transfer and Higher-Energy Collision Dissociation Tandem Mass Spectrometry
- (2012) Christian K. Frese et al. ANALYTICAL CHEMISTRY
- Improve the Coverage for the Analysis of Phosphoproteome of HeLa Cells by a Tandem Digestion Approach
- (2012) Yangyang Bian et al. JOURNAL OF PROTEOME RESEARCH
- TiSH — a robust and sensitive global phosphoproteomics strategy employing a combination of TiO2, SIMAC, and HILIC
- (2012) Kasper Engholm-Keller et al. Journal of Proteomics
- Platform-independent and Label-free Quantitation of Proteomic Data Using MS1 Extracted Ion Chromatograms in Skyline
- (2012) Birgit Schilling et al. MOLECULAR & CELLULAR PROTEOMICS
- Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators
- (2012) Bernd Bodenmiller et al. NATURE BIOTECHNOLOGY
- Advances in Quantitative Phosphoproteomics
- (2011) Carol L. Nilsson ANALYTICAL CHEMISTRY
- Microscale Phosphoproteome Analysis of 10 000 Cells from Human Cancer Cell Lines
- (2011) Takeshi Masuda et al. ANALYTICAL CHEMISTRY
- The Evolution of Protein Kinase Inhibitors from Antagonists to Agonists of Cellular Signaling
- (2011) Arvin C. Dar et al. Annual Review of Biochemistry
- Hallmarks of Cancer: The Next Generation
- (2011) Douglas Hanahan et al. CELL
- First-in-Man Clinical Trial of the Oral Pan-AKT Inhibitor MK-2206 in Patients With Advanced Solid Tumors
- (2011) Timothy A. Yap et al. JOURNAL OF CLINICAL ONCOLOGY
- Multidimensional Strategy for Sensitive Phosphoproteomics Incorporating Protein Prefractionation Combined with SIMAC, HILIC, and TiO2Chromatography Applied to Proximal EGF Signaling
- (2011) Kasper Engholm-Keller et al. JOURNAL OF PROTEOME RESEARCH
- Development and Application of a Phosphoproteomic Method Using Electrostatic Repulsion-Hydrophilic Interaction Chromatography (ERLIC), IMAC, and LC–MS/MS Analysis to Study Marek’s Disease Virus Infection
- (2011) Ko-yi Chien et al. JOURNAL OF PROTEOME RESEARCH
- Universal and Confident Phosphorylation Site Localization Using phosphoRS
- (2011) Thomas Taus et al. JOURNAL OF PROTEOME RESEARCH
- Online Nanoflow Multidimensional Fractionation for High Efficiency Phosphopeptide Analysis
- (2011) Scott B. Ficarro et al. MOLECULAR & CELLULAR PROTEOMICS
- Evaluation of HCD- and CID-type Fragmentation Within Their Respective Detection Platforms For Murine Phosphoproteomics
- (2011) Mark P. Jedrychowski et al. MOLECULAR & CELLULAR PROTEOMICS
- A large-scale method to measure absolute protein phosphorylation stoichiometries
- (2011) Ronghu Wu et al. NATURE METHODS
- MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics
- (2011) Lily Ting et al. NATURE METHODS
- Improved Survival with Vemurafenib in Melanoma with BRAF V600E Mutation
- (2011) Paul B. Chapman et al. NEW ENGLAND JOURNAL OF MEDICINE
- PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse
- (2011) P. V. Hornbeck et al. NUCLEIC ACIDS RESEARCH
- Less label, more free: Approaches in label-free quantitative mass spectrometry
- (2011) Karlie A. Neilson et al. PROTEOMICS
- Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells
- (2011) Yuexi Wang et al. PROTEOMICS
- A Tissue-Specific Atlas of Mouse Protein Phosphorylation and Expression
- (2010) Edward L. Huttlin et al. CELL
- Phase I/II Study of the Src Inhibitor Dasatinib in Combination With Erlotinib in Advanced Non–Small-Cell Lung Cancer
- (2010) Eric B. Haura et al. JOURNAL OF CLINICAL ONCOLOGY
- Quantitative Phosphoproteomic Analysis of T Cell Receptor Signaling in Diabetes Prone and Resistant Mice
- (2010) Leo K. Iwai et al. JOURNAL OF PROTEOME RESEARCH
- In-depth Analyses of Kinase-dependent Tyrosine Phosphoproteomes Based on Metal Ion-functionalized Soluble Nanopolymers
- (2010) Anton B. Iliuk et al. MOLECULAR & CELLULAR PROTEOMICS
- Evolutionary Constraints of Phosphorylation in Eukaryotes, Prokaryotes, and Mitochondria
- (2010) Florian Gnad et al. MOLECULAR & CELLULAR PROTEOMICS
- Reverse phase protein microarrays advance to use in clinical trials
- (2010) Claudius Mueller et al. Molecular Oncology
- Phospho.ELM: a database of phosphorylation sites--update 2011
- (2010) H. Dinkel et al. NUCLEIC ACIDS RESEARCH
- Staphylococcal PknB as the First Prokaryotic Representative of the Proline-Directed Kinases
- (2010) Malgorzata Miller et al. PLoS One
- Magnetic Bead Processor for Rapid Evaluation and Optimization of Parameters for Phosphopeptide Enrichment
- (2009) Scott B. Ficarro et al. ANALYTICAL CHEMISTRY
- Lys-N and Trypsin Cover Complementary Parts of the Phosphoproteome in a Refined SCX-Based Approach
- (2009) Sharon Gauci et al. ANALYTICAL CHEMISTRY
- High Precision Quantitative Proteomics Using iTRAQ on an LTQ Orbitrap: A New Mass Spectrometric Method Combining the Benefits of All
- (2009) Thomas Köcher et al. JOURNAL OF PROTEOME RESEARCH
- SLoMo: Automated Site Localization of Modifications from ETD/ECD Mass Spectra
- (2009) Christopher M. Bailey et al. JOURNAL OF PROTEOME RESEARCH
- An Extensive Survey of Tyrosine Phosphorylation Revealing New Sites in Human Mammary Epithelial Cells
- (2009) Tyler H. Heibeck et al. JOURNAL OF PROTEOME RESEARCH
- SysPTM: A Systematic Resource for Proteomic Research on Post-translational Modifications
- (2009) Hong Li et al. MOLECULAR & CELLULAR PROTEOMICS
- In-depth Qualitative and Quantitative Profiling of Tyrosine Phosphorylation Using a Combination of Phosphopeptide Immunoaffinity Purification and Stable Isotope Dimethyl Labeling
- (2009) Paul J. Boersema et al. MOLECULAR & CELLULAR PROTEOMICS
- Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma
- (2009) Terri A Addona et al. NATURE BIOTECHNOLOGY
- Shifting paradigms: the seeds of oncogene addiction
- (2009) Charles L Sawyers NATURE MEDICINE
- Gefitinib or Carboplatin–Paclitaxel in Pulmonary Adenocarcinoma
- (2009) Tony S. Mok et al. NEW ENGLAND JOURNAL OF MEDICINE
- Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry
- (2009) D. L. Swaney et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evidence for phosphorylation of serine 753 in CFTR using a novel metal-ion affinity resin and matrix-assisted laser desorption mass spectrometry
- (2009) David C. A. Neville et al. PROTEIN SCIENCE
- Phosphopeptide enrichment using metal oxide affinity chromatography
- (2009) Alexander Leitner TRAC-TRENDS IN ANALYTICAL CHEMISTRY
- Practical Implementation of 2D HPLC Scheme with Accurate Peptide Retention Prediction in Both Dimensions for High-Throughput Bottom-Up Proteomics
- (2008) Ravi C. Dwivedi et al. ANALYTICAL CHEMISTRY
- NVP-BEZ235, a Dual PI3K/mTOR Inhibitor, Prevents PI3K Signaling and Inhibits the Growth of Cancer Cells with Activating PI3K Mutations
- (2008) V. Serra et al. CANCER RESEARCH
- A Phase II Clinical Trial of Sorafenib in Androgen-Independent Prostate Cancer
- (2008) W. L. Dahut et al. CLINICAL CANCER RESEARCH
- Validation and comparison of two multiplex technologies, Luminex® and Mesoscale Discovery, for human cytokine profiling
- (2008) Ferdousi Chowdhury et al. JOURNAL OF IMMUNOLOGICAL METHODS
- A Comparative Study of Electrostatic Repulsion-Hydrophilic Interaction Chromatography (ERLIC) versus SCX-IMAC-Based Methods for Phosphopeptide Isolation/Enrichment
- (2008) Chee Sian Gan et al. JOURNAL OF PROTEOME RESEARCH
- Specific Phosphopeptide Enrichment with Immobilized Titanium Ion Affinity Chromatography Adsorbent for Phosphoproteome Analysis
- (2008) Houjiang Zhou et al. JOURNAL OF PROTEOME RESEARCH
- PhosphoScore: An Open-Source Phosphorylation Site Assignment Tool for MSnData
- (2008) Brian E. Ruttenberg et al. JOURNAL OF PROTEOME RESEARCH
- PhosphoScan: A Probability-Based Method for Phosphorylation Site Prediction Using MS2/MS3 Pair Information
- (2008) Yunhu Wan et al. JOURNAL OF PROTEOME RESEARCH
- Efficacy of everolimus in advanced renal cell carcinoma: a double-blind, randomised, placebo-controlled phase III trial
- (2008) Robert J Motzer et al. LANCET
- Hydrophilic Interaction Chromatography Reduces the Complexity of the Phosphoproteome and Improves Global Phosphopeptide Isolation and Detection
- (2008) Dean E. McNulty et al. MOLECULAR & CELLULAR PROTEOMICS
- Laser Capture Microdissection and Protein Microarray Analysis of Human Non-small Cell Lung Cancer
- (2008) Amy J. VanMeter et al. MOLECULAR & CELLULAR PROTEOMICS
- Bead-based profiling of tyrosine kinase phosphorylation identifies SRC as a potential target for glioblastoma therapy
- (2008) Jinyan Du et al. NATURE BIOTECHNOLOGY
- Electrostatic Repulsion Hydrophilic Interaction Chromatography for Isocratic Separation of Charged Solutes and Selective Isolation of Phosphopeptides
- (2007) Andrew J. Alpert ANALYTICAL CHEMISTRY
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