Quantitative Measurement of Phosphoproteome Response to Osmotic Stress inArabidopsisBased on Library-Assisted eXtracted Ion Chromatogram (LAXIC)

Osmotic stress signaling via protein kinases

(2012) Hiroaki Fujii et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Accurate Mass Spectrometry Based Protein Quantification via Shared Peptides

(2012) Banu Dost et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Label-Free Quantitation of Protein Modifications by Pseudo Selected Reaction Monitoring with Internal Reference Peptides

(2012) Stacy D. Sherrod et al.   JOURNAL OF PROTEOME RESEARCH

Global Proteomic Assessment of the Classical Protein-Tyrosine Phosphatome and “Redoxome”

(2011) Robert Karisch et al.   CELL

Liquid Chromatography-Mass Spectrometry-based Quantitative Proteomics

(2011) Fang Xie et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Arabidopsis thaliana calcium-dependent lipid-binding protein (AtCLB): a novel repressor of abiotic stress response

(2011) Kanishka de Silva et al.   JOURNAL OF EXPERIMENTAL BOTANY

ABA-mediated transcriptional regulation in response to osmotic stress in plants

(2011) Yasunari Fujita et al.   JOURNAL OF PLANT RESEARCH

Universal and Confident Phosphorylation Site Localization Using phosphoRS

(2011) Thomas Taus et al.   JOURNAL OF PROTEOME RESEARCH

Correct Interpretation of Comprehensive Phosphorylation Dynamics Requires Normalization by Protein Expression Changes

(2011) Ronghu Wu et al.   MOLECULAR & CELLULAR PROTEOMICS

An Informatics-assisted Label-free Approach for Personalized Tissue Membrane Proteomics: Case Study on Colorectal Cancer

(2011) Chia-Li Han et al.   MOLECULAR & CELLULAR PROTEOMICS

Large-scale phosphosite quantification in tissues by a spike-in SILAC method

(2011) Mara Monetti et al.   NATURE METHODS

Arabidopsis MKKK20 is involved in osmotic stress response via regulation of MPK6 activity

(2011) Jae-Min Kim et al.   PLANT CELL REPORTS

A dual regulatory role of Arabidopsis calreticulin-2 in plant innate immunity

(2011) Yongjian Qiu et al.   PLANT JOURNAL

Regulatory Subunit B'  of Protein Phosphatase 2A Prevents Unnecessary Defense Reactions under Low Light in Arabidopsis

(2011) A. Trotta et al.   PLANT PHYSIOLOGY

Arabidopsis decuple mutant reveals the importance of SnRK2 kinases in osmotic stress responses in vivo

(2011) H. Fujii et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Combinatorial Libraries of Synthetic Peptides as a Model for Shotgun Proteomics

(2010) Brian C. Bohrer et al.   ANALYTICAL CHEMISTRY

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

A Tissue-Specific Atlas of Mouse Protein Phosphorylation and Expression

(2010) Edward L. Huttlin et al.   CELL

In-depth Analyses of Kinase-dependent Tyrosine Phosphoproteomes Based on Metal Ion-functionalized Soluble Nanopolymers

(2010) Anton B. Iliuk et al.   MOLECULAR & CELLULAR PROTEOMICS

A Self-validating Quantitative Mass Spectrometry Method for Assessing the Accuracy of High-content Phosphoproteomic Experiments

(2010) Pedro Casado et al.   MOLECULAR & CELLULAR PROTEOMICS

Calcium-Dependent Protein Kinase CPK21 Functions in Abiotic Stress Response in Arabidopsis thaliana

(2010) Sandra Franz et al.   Molecular Plant

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The RNA Binding Protein Tudor-SN Is Essential for Stress Tolerance and Stabilizes Levels of Stress-Responsive mRNAs Encoding Secreted Proteins in Arabidopsis

(2010) N. F. dit Frey et al.   PLANT CELL

AtCPK6, a functionally redundant and positive regulator involved in salt/drought stress tolerance in Arabidopsis

(2010) Jing Xu et al.   PLANTA

A regulon conserved in monocot and dicot plants defines a functional module in antifungal plant immunity

(2010) M. Humphry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In planta changes in protein phosphorylation induced by the plant hormone abscisic acid

(2010) K. G. Kline et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Increased Confidence in Large-Scale Phosphoproteomics Data by Complementary Mass Spectrometric Techniques and Matching of Phosphopeptide Data Sets

(2009) Maria P. Alcolea et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative Phosphoproteomics of Tomato Mounting a Hypersensitive Response Reveals a Swift Suppression of Photosynthetic Activity and a Differential Role for Hsp90 Isoforms

(2009) Iris J. E. Stulemeijer et al.   JOURNAL OF PROTEOME RESEARCH

A New Approach for Quantitative Phosphoproteomic Dissection of Signaling Pathways Applied to T Cell Receptor Activation

(2009) Vinh Nguyen et al.   MOLECULAR & CELLULAR PROTEOMICS

Large-Scale Arabidopsis Phosphoproteome Profiling Reveals Novel Chloroplast Kinase Substrates and Phosphorylation Networks

(2009) S. Reiland et al.   PLANT PHYSIOLOGY

Arabidopsis mutant deficient in 3 abscisic acid-activated protein kinases reveals critical roles in growth, reproduction, and stress

(2009) H. Fujii et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phosphoproteome Analysis ofDrosophila melanogasterEmbryos

(2008) Bo Zhai et al.   JOURNAL OF PROTEOME RESEARCH

Advancements in plant proteomics using quantitative mass spectrometry

(2008) Silke Oeljeklaus et al.   Journal of Proteomics

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Functional Characterization of Arabidopsis Calreticulin1a: A Key Alleviator of Endoplasmic Reticulum Stress

(2008) A. Christensen et al.   PLANT AND CELL PHYSIOLOGY

Analysis of the Arabidopsis Histidine Kinase ATHK1 Reveals a Connection between Vegetative Osmotic Stress Sensing and Seed Maturation

(2008) D. J. Wohlbach et al.   PLANT CELL

A versatile strategy to define the phosphorylation preferences of plant protein kinases and screen for putative substrates

(2008) Florina Vlad et al.   PLANT JOURNAL