Gut microbiome ADP-ribosyltransferases are widespread phage-encoded fitness factors

Clostridioides difficile exploits toxin-mediated inflammation to alter the host nutritional landscape and exclude competitors from the gut microbiota

(2021) Joshua R. Fletcher et al.   Nature Communications

PARPs and ADP-ribosylation: 60 years on

(2020) W. Lee Kraus   GENES & DEVELOPMENT

PARPs and ADP-ribosylation in RNA biology: from RNA expression and processing to protein translation and proteostasis

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The impact of PARPs and ADP-ribosylation on inflammation and host–pathogen interactions

(2020) Anthony R. Fehr et al.   GENES & DEVELOPMENT

A unified catalog of 204,938 reference genomes from the human gut microbiome

(2020) Alexandre Almeida et al.   NATURE BIOTECHNOLOGY

Several New Putative Bacterial ADP-Ribosyltransferase Toxins Are Revealed from In Silico Data Mining, Including the Novel Toxin Vorin, Encoded by the Fire Blight Pathogen Erwinia amylovora

(2020) Olivier Tremblay et al.   Toxins

Evolutionary Features in the Structure and Function of Bacterial Toxins

(2019) Raj Kumar et al.   Toxins

Expansion of Bacteriophages Is Linked to Aggravated Intestinal Inflammation and Colitis

(2019) Lasha Gogokhia et al.   Cell Host & Microbe

Bacteroides-Derived Sphingolipids Are Critical for Maintaining Intestinal Homeostasis and Symbiosis

(2019) Eric M. Brown et al.   Cell Host & Microbe

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

(2019) Jason Lloyd-Price et al.   NATURE

NGPhylogeny.fr: new generation phylogenetic services for non-specialists

(2019) Frédéric Lemoine et al.   NUCLEIC ACIDS RESEARCH

Cholera toxin promotes pathogen acquisition of host-derived nutrients

(2019) Fabian Rivera-Chávez et al.   NATURE

A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research

(2019) M. Poyet et al.   NATURE MEDICINE

A Ribose-Scavenging System Confers Colonization Fitness on the Human Gut Symbiont Bacteroides thetaiotaomicron in a Diet-Specific Manner

(2019) Robert W.P. Glowacki et al.   Cell Host & Microbe

Insights into the biogenesis, function, and regulation of ADP-ribosylation

(2018) Michael S Cohen et al.   Nature Chemical Biology

Relationship Between Biofilm Formation and Antimicrobial Resistance in Gram-Negative Bacteria

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Nuclear envelope assembly defects link mitotic errors to chromothripsis

(2018) Shiwei Liu et al.   NATURE

Bifunctional Immunity Proteins Protect Bacteria against FtsZ-Targeting ADP-Ribosylating Toxins

(2018) See-Yeun Ting et al.   CELL

The RES domain toxins of RES-Xre toxin-antitoxin modules induce cell stasis by degrading NAD+

(2018) Ragnhild Bager Skjerning et al.   MOLECULAR MICROBIOLOGY

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

An integrated catalog of reference genes in the human gut microbiome

(2014) Junhua Li et al.   NATURE BIOTECHNOLOGY

Novel bacterial ADP-ribosylating toxins: structure and function

(2014) Nathan C. Simon et al.   NATURE REVIEWS MICROBIOLOGY

PATRIC, the bacterial bioinformatics database and analysis resource

(2013) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

(2013) Nicola Segata et al.   Nature Communications

Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB)

(2012) Sünje J. Pamp et al.   GENOME RESEARCH

A composite bacteriophage alters colonization by an intestinal commensal bacterium

(2012) B. A. Duerkop et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Photox, a Novel Actin-targeting Mono-ADP-ribosyltransferase fromPhotorhabdus luminescens

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Cholera Toxin: An Intracellular Journey into the Cytosol by Way of the Endoplasmic Reticulum

(2010) Naomi L. B. Wernick et al.   Toxins

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Cholera transmission: the host, pathogen and bacteriophage dynamic

(2009) Eric J. Nelson et al.   NATURE REVIEWS MICROBIOLOGY

Non-muscle myosin II takes centre stage in cell adhesion and migration

(2009) Miguel Vicente-Manzanares et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Clostridium difficile Toxin CDT Induces Formation of Microtubule-Based Protrusions and Increases Adherence of Bacteria

(2009) Carsten Schwan et al.   PLoS Pathogens

Cholera toxin structure, gene regulation and pathophysiological and immunological aspects

(2008) J. Sánchez et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Starch Catabolism by a Prominent Human Gut Symbiont Is Directed by the Recognition of Amylose Helices

(2008) Nicole M. Koropatkin et al.   STRUCTURE

Needle in the haystack: structure-based toxin discovery

(2008) Robert J. Fieldhouse et al.   TRENDS IN BIOCHEMICAL SCIENCES