HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences
出版年份 2021 全文链接
标题
HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences
作者
关键词
-
出版物
BMC BIOINFORMATICS
Volume 22, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-07-17
DOI
10.1186/s12859-021-04294-2
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Early transmissibility assessment of the N501Y mutant strains of SARS-CoV-2 in the United Kingdom, October to November 2020
- (2021) Kathy Leung et al. Eurosurveillance
- Vaccine 2.0: Moderna and other companies plan tweaks that would protect against new coronavirus mutations
- (2021) Kai Kupferschmidt SCIENCE
- Covid-19: Novavax vaccine efficacy is 86% against UK variant and 60% against South African variant
- (2021) Elisabeth Mahase BMJ-British Medical Journal
- A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology
- (2020) Andrew Rambaut et al. Nature Microbiology
- Emerging Pandemic Diseases: How We Got to COVID-19
- (2020) David M. Morens et al. CELL
- Nextstrain: real-time tracking of pathogen evolution
- (2018) James Hadfield et al. BIOINFORMATICS
- OUP accepted manuscript
- (2018) BIOINFORMATICS
- GISAID: Global initiative on sharing all influenza data – from vision to reality
- (2017) Yuelong Shu et al. Eurosurveillance
- Zika: the origin and spread of a mosquito-borne virus
- (2016) Mary Kay Kindhauser et al. BULLETIN OF THE WORLD HEALTH ORGANIZATION
- Sambamba: fast processing of NGS alignment formats
- (2015) Artem Tarasov et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Evaluation of Alignment Algorithms for Discovery and Identification of Pathogens Using RNA-Seq
- (2013) Ivan Borozan et al. PLoS One
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
- (2012) Andreas Wilm et al. NUCLEIC ACIDS RESEARCH
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
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