Loss of genetic diversity as a consequence of selection in response to highpCO2

WASP: allele-specific software for robust molecular quantitative trait locus discovery

(2015) Bryce van de Geijn et al.   NATURE METHODS

Experimental ocean acidification alters the allocation of metabolic energy

(2015) T.-C. Francis Pan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic determinants of coral heat tolerance across latitudes

(2015) G. B. Dixon et al.   SCIENCE

Quantitative developmental transcriptomes of the sea urchin Strongylocentrotus purpuratus

(2013) Qiang Tu et al.   DEVELOPMENTAL BIOLOGY

Control of Hematopoietic Stem Cell Emergence by Antagonistic Functions of Ribosomal Protein Paralogs

(2013) Yong Zhang et al.   DEVELOPMENTAL CELL

Signs of Adaptation to Local pH Conditions across an Environmental Mosaic in the California Current Ecosystem

(2013) M. H. Pespeni et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Signals of selection in outlier loci in a widely dispersing species across an environmental mosaic

(2013) Melissa H. Pespeni et al.   MOLECULAR ECOLOGY

The stunting effect of a high CO2 ocean on calcification and development in sea urchin larvae, a synthesis from the tropics to the poles

(2013) M. Byrne et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolutionary change during experimental ocean acidification

(2013) M. H. Pespeni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution in an acidifying ocean

(2013) Jennifer M. Sunday et al.   TRENDS IN ECOLOGY & EVOLUTION

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis

(2012) Q. Tu et al.   GENOME RESEARCH

Detecting differential usage of exons from RNA-seq data

(2012) S. Anders et al.   GENOME RESEARCH

Specialized ribosomes: a new frontier in gene regulation and organismal biology

(2012) Shifeng Xue et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The Geological Record of Ocean Acidification

(2012) B. Honisch et al.   SCIENCE

The Physiology of Global Change: Linking Patterns to Mechanisms

(2011) George N. Somero   Annual Review of Marine Science

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

CO2 induced seawater acidification impacts sea urchin larval development I: Elevated metabolic rates decrease scope for growth and induce developmental delay

(2011) M. Stumpp et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Functional impacts of ocean acidification in an ecologically critical foundation species

(2011) B. Gaylord et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The ocean acidification seascape and its relationship to the performance of calcifying marine invertebrates: Laboratory experiments on the development of urchin larvae framed by environmentally-relevant pCO2/pH

(2011) Pauline C. Yu et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

High-Frequency Dynamics of Ocean pH: A Multi-Ecosystem Comparison

(2011) Gretchen E. Hofmann et al.   PLoS One

Meta-analysis reveals negative yet variable effects of ocean acidification on marine organisms

(2010) Kristy J. Kroeker et al.   ECOLOGY LETTERS

Impact of near-future ocean acidification on echinoderms

(2010) S. Dupont et al.   ECOTOXICOLOGY

The physiology of climate change: how potentials for acclimatization and genetic adaptation will determine 'winners' and 'losers'

(2010) G. N. Somero   JOURNAL OF EXPERIMENTAL BIOLOGY

Quantitative regulation of alternative splicing in evolution and development

(2009) Manuel Irimia et al.   BIOESSAYS

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

(2009) Jacob F. Degner et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Ocean acidification alters skeletogenesis and gene expression in larval sea urchins

(2009) MJ O’Donnell et al.   MARINE ECOLOGY PROGRESS SERIES

Ocean Acidification and Its Potential Effects on Marine Ecosystems

(2008) John M. Guinotte et al.   Annals of the New York Academy of Sciences

Ocean Acidification: The Other CO2Problem

(2008) Scott C. Doney et al.   Annual Review of Marine Science

SpBase: the sea urchin genome database and web site

(2008) R. A. Cameron et al.   NUCLEIC ACIDS RESEARCH

Evidence for Upwelling of Corrosive "Acidified" Water onto the Continental Shelf

(2008) R. A. Feely et al.   SCIENCE

ECOLOGY: Physiology and Climate Change

(2008) H. O. Portner et al.   SCIENCE

Environmental change and the option value of genetic diversity

(2008) Alistair S. Jump et al.   TRENDS IN PLANT SCIENCE

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION