Ultrasensitive NanoLC-MS of Subnanogram Protein Samples Using Second Generation Micropillar Array LC Technology with Orbitrap Exploris 480 and FAIMS PRO

Improved Single-Cell Proteome Coverage Using Narrow-Bore Packed NanoLC Columns and Ultrasensitive Mass Spectrometry

(2020) Yongzheng Cong et al.   ANALYTICAL CHEMISTRY

A Compact Quadrupole-Orbitrap Mass Spectrometer with FAIMS Interface Improves Proteome Coverage in Short LC Gradients

(2020) Dorte B. Bekker-Jensen et al.   MOLECULAR & CELLULAR PROTEOMICS

Improved Sensitivity of Ultralow Flow LC–MS-Based Proteomic Profiling of Limited Samples Using Monolithic Capillary Columns and FAIMS Technology

(2020) Michal Greguš et al.   ANALYTICAL CHEMISTRY

Fully Automated Sample Processing and Analysis Workflow for Low-Input Proteome Profiling

(2020) Yiran Liang et al.   ANALYTICAL CHEMISTRY

Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning

(2019) Siegfried Gessulat et al.   NATURE METHODS

High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform

(2019) Maowei Dou et al.   ANALYTICAL CHEMISTRY

Improved Sensitivity in Low-Input Proteomics Using Micropillar Array-Based Chromatography

(2019) Johannes Stadlmann et al.   ANALYTICAL CHEMISTRY

Comprehensive Single-Shot Proteomics with FAIMS on a Hybrid Orbitrap Mass Spectrometer

(2018) Alexander S. Hebert et al.   ANALYTICAL CHEMISTRY

Subnanogram proteomics: Impact of LC column selection, MS instrumentation and data analysis strategy on proteome coverage for trace samples

(2018) Ying Zhu et al.   INTERNATIONAL JOURNAL OF MASS SPECTROMETRY

Nanodroplet processing platform for deep and quantitative proteome profiling of 10–100 mammalian cells

(2018) Ying Zhu et al.   Nature Communications

Nanoproteomics comes of age

(2018) Ying Zhu et al.   Expert Review of Proteomics

apQuant: Accurate Label-Free Quantification by Quality Filtering

(2018) Johannes Doblmann et al.   JOURNAL OF PROTEOME RESEARCH

The PRIDE database and related tools and resources in 2019: improving support for quantification data

(2018) Yasset Perez-Riverol et al.   NUCLEIC ACIDS RESEARCH

Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0

(2016) Matthew The et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Mass-spectrometric exploration of proteome structure and function

(2016) Ruedi Aebersold et al.   NATURE

MS Amanda, a Universal Identification Algorithm Optimized for High Accuracy Tandem Mass Spectra

(2014) Viktoria Dorfer et al.   JOURNAL OF PROTEOME RESEARCH

Suppression of Peptide Sample Losses in Autosampler Vials

(2013) Karel Stejskal et al.   JOURNAL OF PROTEOME RESEARCH

Mass spectrometry-based proteomics: existing capabilities and future directions

(2012) Thomas E. Angel et al.   CHEMICAL SOCIETY REVIEWS

The importance of using the optimal plasticware and glassware in studies involving peptides

(2011) Miriam Goebel-Stengel et al.   ANALYTICAL BIOCHEMISTRY

Single-cell dissection of transcriptional heterogeneity in human colon tumors

(2011) Piero Dalerba et al.   NATURE BIOTECHNOLOGY

Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics

(2008) Thomas Koenig et al.   JOURNAL OF PROTEOME RESEARCH

Maximizing peak capacity and separation speed in liquid chromatography

(2008) Patrik Petersson et al.   JOURNAL OF SEPARATION SCIENCE

Peak capacity in unidimensional chromatography

(2007) Uwe Dieter Neue   JOURNAL OF CHROMATOGRAPHY A