Multiple‐trophic patterns of primary succession following retreat of a high‐elevation glacier

Growth of cyanobacterial soil crusts during diurnal freeze-thaw cycles

(2019) Steven K. Schmidt et al.   JOURNAL OF MICROBIOLOGY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

A Worm's World: Ecological Flexibility Pays Off for Free-Living Nematodes in Sediments and Soils

(2019) Michaela Schratzberger et al.   BIOSCIENCE

Evidence for phosphorus limitation in high-elevation unvegetated soils, Niwot Ridge, Colorado

(2019) Clifton P. Bueno de Mesquita et al.   BIOGEOCHEMISTRY

Plant diversity and density predict belowground diversity and function in an early successional alpine ecosystem

(2018) Dorota L. Porazinska et al.   ECOLOGY

Divergent assemblage patterns and driving forces for bacterial and fungal communities along a glacier forefield chronosequence

(2018) Yonglei Jiang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phosphorus, not nitrogen, limits plants and microbial primary producers following glacial retreat

(2018) John L. Darcy et al.   Science Advances

Patterns of root colonization by arbuscular mycorrhizal fungi and dark septate endophytes across a mostly-unvegetated, high-elevation landscape

(2018) Clifton P. Bueno de Mesquita et al.   Fungal Ecology

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Nutrient limitation of soil microbial activity during the earliest stages of ecosystem development

(2017) Sarah C. Castle et al.   OECOLOGIA

Fungi inhabiting fine roots of Pinus heldreichii in the Montenegrin montane forests

(2017) Jelena Lazarević et al.   SYMBIOSIS

Effect of marker choice and thermal cycling protocol on zooplankton DNA metabarcoding studies

(2017) Laurence J. Clarke et al.   Ecology and Evolution

Primary productivity as a control over soil microbial diversity along environmental gradients in a polar desert ecosystem

(2017) Kevin M. Geyer et al.   PeerJ

Biogeochemical Stoichiometry Reveals P and N Limitation Across the Post-glacial Landscape of Denali National Park, Alaska

(2016) S. K. Schmidt et al.   ECOSYSTEMS

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Biogeochemical drivers of microbial community convergence across actively retreating glaciers

(2016) Sarah C. Castle et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation

(2014) Matthew C. Fitzpatrick et al.   ECOLOGY LETTERS

Do bacterial and fungal communities assemble differently during primary succession?

(2014) S. K. Schmidt et al.   MOLECULAR ECOLOGY

Nutrient Addition Dramatically Accelerates Microbial Community Succession

(2014) Joseph E. Knelman et al.   PLoS One

Microbial community dynamics in the forefield of glaciers

(2014) J. A. Bradley et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Glacier retreat crosses a line

(2014) S. Marshall   SCIENCE

Contrasting primary successional trajectories of fungi and bacteria in retreating glacier soils

(2013) Shawn P. Brown et al.   MOLECULAR ECOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Long-term changes in soil microbial communities during primary succession

(2013) Nick A. Cutler et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial enzyme stoichiometry and nutrient limitation in US streams and rivers

(2012) Brian H. Hill et al.   ECOLOGICAL INDICATORS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica ) varies significantly along an elevation gradient

(2012) Tristan Cordier et al.   NEW PHYTOLOGIST

Patterns and processes of initial terrestrial-ecosystem development

(2011) Wolfgang Schaaf et al.   JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE

Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing

(2011) RAKEL BLAALID et al.   MOLECULAR ECOLOGY

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Biogeography and habitat modelling of high-alpine bacteria

(2010) Andrew J. King et al.   Nature Communications

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Microbial activity and diversity during extreme freeze–thaw cycles in periglacial soils, 5400 m elevation, Cordillera Vilcanota, Perú

(2009) S. K. Schmidt et al.   EXTREMOPHILES

Ecoenzymatic stoichiometry of microbial organic nutrient acquisition in soil and sediment

(2009) Robert L. Sinsabaugh et al.   NATURE

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Fumarole-Supported Islands of Biodiversity within a Hyperarid, High-Elevation Landscape on Socompa Volcano, Puna de Atacama, Andes

(2008) E. K. Costello et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The earliest stages of ecosystem succession in high-elevation (5000 metres above sea level), recently deglaciated soils

(2008) S.K Schmidt et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES