Comparative plastome analysis of Blumea , with implications for genome evolution and phylogeny of Asteroideae

Comparative analysis and implications of the chloroplast genomes of three thistles (Carduus L., Asteraceae)

(2021) Joonhyung Jung et al.   PeerJ

Mutational Dynamics of Aroid Chloroplast Genomes II

(2021) Abdullah et al.   Frontiers in Genetics

Evolutionary dynamics of chloroplast genomes in subfamily Aroideae (Araceae)

(2020) Claudia L. Henriquez et al.   GENOMICS

Molecular evolution of chloroplast genomes in Monsteroideae (Araceae)

(2020) Claudia L. Henriquez et al.   PLANTA

Evaluating character partitioning and molecular models in plastid phylogenomics at low taxonomic levels: A case study using Amphilophium (Bignonieae, Bignoniaceae)

(2020) Verônica A. Thode et al.   Journal of Systematics and Evolution

Unprecedented intraindividual structural heteroplasmy in Eleocharis (Cyperaceae, Poales) plastomes

(2020) Chaehee Lee et al.   Genome Biology and Evolution

Correlations among oligonucleotide repeats, nucleotide substitutions, and insertion-deletion mutations in chloroplast genomes of plant family Malvaceae

(2020) Abdullah et al.   Journal of Systematics and Evolution

Complete Chloroplast Genomes of Anthurium huixtlense and Pothos scandens (Pothoideae, Araceae): Unique Inverted Repeat Expansion and Contraction Affect Rate of Evolution

(2020) Abdullah et al.   JOURNAL OF MOLECULAR EVOLUTION

Comparative analyses of 32 complete plastomes of Tef (Eragrostis tef ) accessions from Ethiopia: phylogenetic relationships and mutational hotspots

(2020) Girma Eshetu Teshome et al.   PeerJ

Plastid genomics of Nicotiana (Solanaceae): insights into molecular evolution, positive selection and the origin of the maternal genome of Aztec tobacco (Nicotiana rustica)

(2020) Furrukh Mehmood et al.   PeerJ

Comparative Plastomics of Ashwagandha (Withania, Solanaceae) and Identification of Mutational Hotspots for Barcoding Medicinal Plants

(2020) Furrukh Mehmood et al.   Plants-Basel

Comparison of Chloroplast Genomes among Species of Unisexual and Bisexual Clades of the Monocot Family Araceae

(2020) Abdullah et al.   Plants-Basel

Phylogenomics of the Hyperdiverse Daisy Tribes: Anthemideae, Astereae, Calenduleae, Gnaphalieae, and Senecioneae

(2020) Linda E. Watson et al.   Journal of Systematics and Evolution

Chloroplot: An Online Program for the Versatile Plotting of Organelle Genomes

(2020) Shuyu Zheng et al.   Frontiers in Genetics

Chloroplast genome evolution in the Dracunculus clade (Aroideae, Araceae)

(2020) Abdullah et al.   GENOMICS

Molecular digitization of a botanical garden: high-depth whole genome sequencing of 689 vascular plant species from the Ruili Botanical Garden

(2019) Huan Liu et al.   GigaScience

The complete chloroplast genomes of three Betulaceae species: implications for molecular phylogeny and historical biogeography

(2019) Zhen Yang et al.   PeerJ

Sequencing the Plastid Genome of Giant Ragweed (Ambrosia trifida, Asteraceae) From a Herbarium Specimen

(2019) Gaurav Sablok et al.   Frontiers in Plant Science

Chloroplast genome of Hibiscus rosa-sinensis (Malvaceae): Comparative analyses and identification of mutational hotspots

(2019) Abdullah et al.   GENOMICS

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

A fully resolved backbone phylogeny reveals numerous dispersals and explosive diversifications throughout the history of Asteraceae

(2019) Jennifer R. Mandel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic Reconstruction and Divergence Time Estimation of Blumea DC. (Asteraceae: Inuleae) in China Based on nrDNA ITS and cpDNA trnL-F Sequences

(2019) Ying-bo Zhang et al.   Plants-Basel

Characterization of Withania somnifera chloroplast genome and its comparison with other selected species of Solanaceae

(2019) Furrukh Mehmood et al.   GENOMICS

Chloroplast genome sequences of Artemisia maritima and Artemisia absinthium: Comparative analyses, mutational hotspots in genus Artemisia and phylogeny in family Asteraceae

(2019) Iram Shahzadi et al.   GENOMICS

Chloroplast Genome Sequence of Artemisia scoparia: Comparative Analyses and Screening of Mutational Hotspots

(2019) Shabina Iram et al.   Plants-Basel

Comparative analyses of chloroplast genomes of Theobroma cacao and Theobroma grandiflorum

(2019) Abdullah et al.   BIOLOGIA

IRscope: an online program to visualize the junction sites of chloroplast genomes

(2018) Ali Amiryousefi et al.   BIOINFORMATICS

Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

(2018) Luxian Liu et al.   BMC GENOMICS

GB2sequin - A file converter preparing custom GenBank files for database submission

(2018) Pascal Lehwark et al.   GENOMICS

The chloroplast genome sequence of bittersweet (Solanum dulcamara): Plastid genome structure evolution in Solanaceae

(2018) Ali Amiryousefi et al.   PLoS One

Comprehensive comparative analysis of chloroplast genomes from seven Panax species, and development of an authentication system based on species-unique single nucleotide polymorphism markers

(2018) Van Binh Nguyen et al.   Journal of Ginseng Research

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

(2017) Julio Rozas et al.   MOLECULAR BIOLOGY AND EVOLUTION

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high-Andean diversification (Asteraceae: Astereae: Diplostephium )

(2017) Oscar M. Vargas et al.   NEW PHYTOLOGIST

GeSeq – versatile and accurate annotation of organelle genomes

(2017) Michael Tillich et al.   NUCLEIC ACIDS RESEARCH

The complete chloroplast genome sequence of the CAM epiphyte Spanish moss (Tillandsia usneoides, Bromeliaceae) and its comparative analysis

(2017) Péter Poczai et al.   PLoS One

Multiple Polyploidization Events across Asteraceae with Two Nested Events in the Early History Revealed by Nuclear Phylogenomics

(2016) Chien-Hsun Huang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Macroevolutionary dynamics in the early diversification of Asteraceae

(2016) Jose L. Panero et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A comprehensive generic-level phylogeny of the sunflower family: Implications for the systematics of Chinese Asteraceae

(2016) Zhi-Xi Fu et al.   Journal of Systematics and Evolution

Blumea (Compositae: Inuleae) in continental Southeast Asia

(2016) Pimwadee Pornpongrungrueng et al.   KEW BULLETIN

The linear plastid chromosomes of maize: terminal sequences, structures, and implications for DNA replication

(2015) Delene J. Oldenburg et al.   CURRENT GENETICS

Dynamics of chloroplast genomes in green plants

(2015) Jian-Hong Xu et al.   GENOMICS

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

(2015) Andan Zhu et al.   NEW PHYTOLOGIST

Comparative Analysis of Asteraceae Chloroplast Genomes: Structural Organization, RNA Editing and Evolution

(2015) Mengxing Wang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Early evolution of the angiosperm clade Asteraceae in the Cretaceous of Antarctica

(2015) Viviana D. Barreda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant DNA barcoding: from gene to genome

(2014) Xiwen Li et al.   BIOLOGICAL REVIEWS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Resolution of deep nodes yields an improved backbone phylogeny and a new basal lineage to study early evolution of Asteraceae

(2014) Jose L. Panero et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenomics of the plant family Araceae

(2014) Claudia L. Henriquez et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Blumea balsamifera—A Phytochemical and Pharmacological Review

(2014) Yuxin Pang et al.   MOLECULES

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identification of chloroplast genome loci suitable for high-resolution phylogeographic studies ofColocasia esculenta(L.) Schott (Araceae) and closely related taxa

(2013) Ibrar Ahmed et al.   Molecular Ecology Resources

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Mutational Dynamics of Aroid Chloroplast Genomes

(2012) Ibrar Ahmed et al.   Genome Biology and Evolution

Identification and characterization of plastid trnF(GAA) pseudogenes in four species of Solanum (Solanaceae)

(2011) Péter Poczai et al.   BIOTECHNOLOGY LETTERS

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Chemical Constituents of Plants from the GenusBlumea

(2009) Ming Chen et al.   CHEMISTRY & BIODIVERSITY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH