Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: Test on macroinvertebrate communities in rivers

Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA

(2019) Krista M. Ruppert et al.   Global Ecology and Conservation

Sponges as natural environmental DNA samplers

(2019) Stefano Mariani et al.   CURRENT BIOLOGY

Comparison of DNA metabarcoding and morphological identification for stream macroinvertebrate biodiversity assessment and monitoring

(2019) Joeselle M. Serrana et al.   ECOLOGICAL INDICATORS

Assessment of BOLD and GenBank – Their accuracy and reliability for the identification of biological materials

(2019) Kelly A. Meiklejohn et al.   PLoS One

Applicability of DNA metabarcoding approach in the bioassessment of Portuguese rivers using diatoms

(2019) Andreia Mortágua et al.   ECOLOGICAL INDICATORS

Diatom DNA Metabarcoding for Biomonitoring: Strategies to Avoid Major Taxonomical and Bioinformatical Biases Limiting Molecular Indices Capacities

(2019) Kálmán Tapolczai et al.   Frontiers in Ecology and Evolution

Diatom metabarcoding applied to large scale monitoring networks: Optimization of bioinformatics strategies using Mothur software

(2019) Sinziana F. Rivera et al.   ECOLOGICAL INDICATORS

Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples

(2019) Mehrdad Hajibabaei et al.   PLoS One

Analysis of 13,312 benthic invertebrate samples from German streams reveals minor deviations in ecological status class between abundance and presence/absence data

(2019) Dominik Buchner et al.   PLoS One

Water flow and biofilm cover influence environmental DNA (eDNA) detection in recirculating streams

(2018) Arial Shogren et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Fifth contribution to the knowledge of water mites (Acari: Hydrachnidia) from the Comoros: a checklist and description of one new genus and four new species 

(2018) VLADIMIR M. PEŠIĆ et al.   ZOOTAXA

DNA metabarcoding from sample fixative as a quick and voucher-preserving biodiversity assessment method

(2018) Vera M A Zizka et al.   GENOME

Database resources of the National Center for Biotechnology Information

(2018) Eric W Sayers et al.   NUCLEIC ACIDS RESEARCH

The impact of OTU sequence similarity threshold on diatom-based bioassessment: A case study of the rivers of Mayotte (France, Indian Ocean)

(2018) Kálmán Tapolczai et al.   Ecology and Evolution

Flow conditions influence diuron toxicokinetics and toxicodynamics in freshwater biofilms

(2018) Betty Chaumet et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment

(2017) S. F. Rivera et al.   HYDROBIOLOGIA

Taxonomy- or trait-based ecological assessment for tropical rivers? Case study on benthic diatoms in Mayotte island (France, Indian Ocean)

(2017) Kálmán Tapolczai et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity

(2017) Iliana Bista et al.   Nature Communications

Modelling the transport of environmental DNA through a porous substrate using continuous flow-through column experiments

(2016) Arial J. Shogren et al.   Journal of the Royal Society Interface

The ecology and biogeochemistry of stream biofilms

(2016) Tom J. Battin et al.   NATURE REVIEWS MICROBIOLOGY

Detection of Invasive Mosquito Vectors Using Environmental DNA (eDNA) from Water Samples

(2016) Judith Schneider et al.   PLoS One

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

The ecology of environmental DNA and implications for conservation genetics

(2015) Matthew A. Barnes et al.   CONSERVATION GENETICS

Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies

(2015) Ida Baerholm Schnell et al.   Molecular Ecology Resources

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

(2015) Melanie Schirmer et al.   NUCLEIC ACIDS RESEARCH

Third contribution to the knowledge of water mites from the Comoros, with the description of two new species (Acari: Hydrachnidia)

(2015) VLADIMIR PEŠIĆ et al.   ZOOTAXA

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

(2015) Vasco Elbrecht et al.   PLoS One

Environmental monitoring using next generation sequencing: rapid identification of macroinvertebrate bioindicator species

(2013) Melissa E Carew et al.   Frontiers in Zoology

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Natural Biofilms in Freshwater Ecosystem: Indicators of the Presence of Polycyclic Aromatic Hydrocarbons

(2012) Sandro Froehner et al.   WATER AIR AND SOIL POLLUTION

Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol

(2012) Mehrdad Hajibabaei et al.   BMC ECOLOGY

Recent views on river pollution and diatoms

(2011) Frédéric Rimet   HYDROBIOLOGIA

Can DNA barcodes of stream macroinvertebrates improve descriptions of community structure and water quality?

(2011) Bernard W. Sweeney et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Comparison of the Mantel test and alternative approaches for detecting complex multivariate relationships in the spatial analysis of genetic data

(2010) PIERRE LEGENDRE et al.   Molecular Ecology Resources

The biofilm matrix

(2010) Hans-Curt Flemming et al.   NATURE REVIEWS MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY