A model of active transcription hubs that unifies the roles of active promoters and enhancers
出版年份 2021 全文链接
标题
A model of active transcription hubs that unifies the roles of active promoters and enhancers
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume 49, Issue 8, Pages 4493-4505
出版商
Oxford University Press (OUP)
发表日期
2021-03-23
DOI
10.1093/nar/gkab235
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens
- (2019) Molly Gasperini et al. CELL
- Long-range enhancer–promoter contacts in gene expression control
- (2019) Stefan Schoenfelder et al. NATURE REVIEWS GENETICS
- Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression
- (2019) Yad Ghavi-Helm et al. NATURE GENETICS
- Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells
- (2018) Tahsin Stefan Barakat et al. Cell Stem Cell
- Enhancer transcription: what, where, when, and why?
- (2018) Nathaniel D. Tippens et al. GENES & DEVELOPMENT
- Widespread transcriptional pausing and elongation control at enhancers
- (2018) Telmo Henriques et al. GENES & DEVELOPMENT
- The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription
- (2018) Olga Mikhaylichenko et al. GENES & DEVELOPMENT
- Enhancer hubs and loop collisions identified from single-allele topologies
- (2018) Amin Allahyar et al. NATURE GENETICS
- Imaging dynamic and selective low-complexity domain interactions that control gene transcription
- (2018) Shasha Chong et al. SCIENCE
- Coactivator condensation at super-enhancers links phase separation and gene control
- (2018) Benjamin R. Sabari et al. SCIENCE
- Mediator and RNA polymerase II clusters associate in transcription-dependent condensates
- (2018) Won-Ki Cho et al. SCIENCE
- Widespread Enhancer Activity from Core Promoters
- (2018) Alejandra Medina-Rivera et al. TRENDS IN BIOCHEMICAL SCIENCES
- Dissecting super-enhancer hierarchy based on chromatin interactions
- (2018) Jialiang Huang et al. Nature Communications
- Enhancer redundancy provides phenotypic robustness in mammalian development
- (2018) Marco Osterwalder et al. NATURE
- Dynamic interplay between enhancer–promoter topology and gene activity
- (2018) Hongtao Chen et al. NATURE GENETICS
- Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains
- (2018) Ann Boija et al. CELL
- The Human Transcription Factors
- (2018) Samuel A. Lambert et al. CELL
- Clustering of Drosophila housekeeping promoters facilitates their expression
- (2017) Marc Corrales et al. GENOME RESEARCH
- Two independent modes of chromatin organization revealed by cohesin removal
- (2017) Wibke Schwarzer et al. NATURE
- Genome-wide characterization of mammalian promoters with distal enhancer functions
- (2017) Lan T M Dao et al. NATURE GENETICS
- Biomolecular condensates: organizers of cellular biochemistry
- (2017) Salman F. Banani et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances
- (2016) Orsolya Symmons et al. DEVELOPMENTAL CELL
- Enhancers and super-enhancers have an equivalent regulatory role in embryonic stem cells through regulation of single or multiple genes
- (2016) Sakthi D. Moorthy et al. GENOME RESEARCH
- Chromatin Domains: The Unit of Chromosome Organization
- (2016) Jesse R. Dixon et al. MOLECULAR CELL
- Formation of new chromatin domains determines pathogenicity of genomic duplications
- (2016) Martin Franke et al. NATURE
- Hierarchy within the mammary STAT5-driven Wap super-enhancer
- (2016) Ha Youn Shin et al. NATURE GENETICS
- Genetic dissection of the α-globin super-enhancer in vivo
- (2016) Deborah Hay et al. NATURE GENETICS
- Super-Enhancers at the Nanog Locus Differentially Regulate Neighboring Pluripotency-Associated Genes
- (2016) Steven Blinka et al. Cell Reports
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- (2015) Darío G. Lupiáñez et al. CELL
- The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
- (2015) Stefan Schoenfelder et al. GENOME RESEARCH
- Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
- (2015) Borbala Mifsud et al. NATURE GENETICS
- CTCF establishes discrete functional chromatin domains at theHoxclusters during differentiation
- (2015) Varun Narendra et al. SCIENCE
- A unified architecture of transcriptional regulatory elements
- (2015) Robin Andersson et al. TRENDS IN GENETICS
- Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data
- (2014) Wenyuan Li et al. BIOINFORMATICS
- Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells
- (2014) Jiji Chen et al. CELL
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- ASox2distal enhancer cluster regulates embryonic stem cell differentiation potential
- (2014) Harry Y. Zhou et al. GENES & DEVELOPMENT
- Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
- (2014) F. Ay et al. GENOME RESEARCH
- Enhancer Function: Mechanistic and Genome-Wide Insights Come Together
- (2014) Jennifer L. Plank et al. MOLECULAR CELL
- Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
- (2014) Leighton J Core et al. NATURE GENETICS
- CRISPR Reveals a Distal Super-Enhancer Required for Sox2 Expression in Mouse Embryonic Stem Cells
- (2014) Yan Li et al. PLoS One
- In search of the determinants of enhancer–promoter interaction specificity
- (2014) Joris van Arensbergen et al. TRENDS IN CELL BIOLOGY
- Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
- (2013) Warren A. Whyte et al. CELL
- Super-Enhancers in the Control of Cell Identity and Disease
- (2013) Denes Hnisz et al. CELL
- The sequencing bias relaxed characteristics of Hi-C derived data and implications for chromatin 3D modeling
- (2013) Cheng Peng et al. NUCLEIC ACIDS RESEARCH
- Real-Time Dynamics of RNA Polymerase II Clustering in Live Human Cells
- (2013) I. I. Cisse et al. SCIENCE
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation
- (2012) Guoliang Li et al. CELL
- ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- (2012) S. G. Landt et al. GENOME RESEARCH
- The long-range interaction landscape of gene promoters
- (2012) Amartya Sanyal et al. NATURE
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Iterative correction of Hi-C data reveals hallmarks of chromosome organization
- (2012) Maxim Imakaev et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Transcription factors: from enhancer binding to developmental control
- (2012) François Spitz et al. NATURE REVIEWS GENETICS
- Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
- (2009) Stewart MacArthur et al. GENOME BIOLOGY
- Comparative Proteomic Phenotyping of Cell Lines and Primary Cells to Assess Preservation of Cell Type-specific Functions
- (2008) Cuiping Pan et al. MOLECULAR & CELLULAR PROTEOMICS
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now