Whole-genome resequencing of 445 Lactuca accessions reveals the domestication history of cultivated lettuce
出版年份 2021 全文链接
标题
Whole-genome resequencing of 445 Lactuca accessions reveals the domestication history of cultivated lettuce
作者
关键词
-
出版物
NATURE GENETICS
Volume 53, Issue 5, Pages 752-760
出版商
Springer Science and Business Media LLC
发表日期
2021-04-13
DOI
10.1038/s41588-021-00831-0
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Lactuca dregeana DC. (Asteraceae: Chicorieae) – A South African crop relative under threat from hybridization and climate change
- (2020) M. Sochor et al. SOUTH AFRICAN JOURNAL OF BOTANY
- Characterization of four polymorphic genes controlling red leaf color in lettuce that have undergone disruptive selection since domestication
- (2019) Wenqing Su et al. PLANT BIOTECHNOLOGY JOURNAL
- Resequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits
- (2019) Shaogui Guo et al. NATURE GENETICS
- The Plant DNA C‐values database (release 7.1): an updated online repository of plant genome size data for comparative studies
- (2019) Jaume Pellicer et al. NEW PHYTOLOGIST
- The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution
- (2017) Hélène Badouin et al. NATURE
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- A review of the history and taxonomy of the enigmatic southern African endemic wild lettuce Lactuca dregeana DC. (Asteraceae: Lactuceae: Lactucinae)
- (2017) Z.O. van Herwijnen et al. SOUTH AFRICAN JOURNAL OF BOTANY
- Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast
- (2017) Daniel C. Jeffares et al. Nature Communications
- Rationalization of genes for resistance to Bremia lactucae in lettuce
- (2016) Lorena Parra et al. EUPHYTICA
- A genomic history of Aboriginal Australia
- (2016) Anna-Sapfo Malaspinas et al. NATURE
- Robust and scalable inference of population history from hundreds of unphased whole genomes
- (2016) Jonathan Terhorst et al. NATURE GENETICS
- The BIG Data Center: from deposition to integration to translation
- (2016) NUCLEIC ACIDS RESEARCH
- Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications
- (2015) Xiaoyu Chen et al. BIOINFORMATICS
- The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome
- (2015) Tanya Z. Berardini et al. GENESIS
- popart: full-feature software for haplotype network construction
- (2015) Jessica W. Leigh et al. Methods in Ecology and Evolution
- Genome-Wide Architecture of Disease Resistance Genes in Lettuce
- (2015) Marilena Christopoulou et al. G3-Genes Genomes Genetics
- Bridger: a new framework for de novo transcriptome assembly using RNA-seq data
- (2015) Zheng Chang et al. GENOME BIOLOGY
- ASTRAL: genome-scale coalescent-based species tree estimation
- (2014) S. Mirarab et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genomic analyses provide insights into the history of tomato breeding
- (2014) Tao Lin et al. NATURE GENETICS
- Next-generation genebanking: plant genetic resources management and utilization in the sequencing era
- (2014) Rob van Treuren et al. Plant Genetic Resources-Characterization and Utilization
- PHYTOCHROME C plays a major role in the acceleration of wheat flowering under long-day photoperiod
- (2014) A. Chen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Wild Lactuca species, their genetic diversity, resistance to diseases and pests, and exploitation in lettuce breeding
- (2013) Aleš Lebeda et al. EUROPEAN JOURNAL OF PLANT PATHOLOGY
- A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity
- (2013) Jianjian Qi et al. NATURE GENETICS
- MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
- (2013) M. S. Campbell et al. PLANT PHYSIOLOGY
- An Ultra-High-Density, Transcript-Based, Genetic Map of Lettuce
- (2013) Maria José Truco et al. G3-Genes Genomes Genetics
- DELLY: structural variant discovery by integrated paired-end and split-read analysis
- (2012) T. Rausch et al. BIOINFORMATICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
- (2012) R. Lanfear et al. MOLECULAR BIOLOGY AND EVOLUTION
- Parallel domestication of the Shattering1 genes in cereals
- (2012) Zhongwei Lin et al. NATURE GENETICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
- (2012) Guangchuang Yu et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- Gene Mapping via Bulked Segregant RNA-Seq (BSR-Seq)
- (2012) Sanzhen Liu et al. PLoS One
- Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
- (2012) Joseph K. Pickrell et al. PLoS Genetics
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Genetic resources collections of leafy vegetables (lettuce, spinach, chicory, artichoke, asparagus, lamb’s lettuce, rhubarb and rocket salad): composition and gaps
- (2011) R. van Treuren et al. GENETIC RESOURCES AND CROP EVOLUTION
- Testing for Ancient Admixture between Closely Related Populations
- (2011) Eric Y. Durand et al. MOLECULAR BIOLOGY AND EVOLUTION
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Distribution of downy mildew (Bremia lactucae Regel) resistances in a genebank collection of lettuce and its wild relatives
- (2011) R. van Treuren et al. Plant Genetic Resources-Characterization and Utilization
- GCTA: A Tool for Genome-wide Complex Trait Analysis
- (2010) Jian Yang et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Population differentiation as a test for selective sweeps
- (2010) H. Chen et al. GENOME RESEARCH
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- ON THE ORIGIN OF CULTIVATED LETTUCE
- (2010) K. LINDQVIST HEREDITAS
- Variance component model to account for sample structure in genome-wide association studies
- (2010) Hyun Min Kang et al. NATURE GENETICS
- TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations
- (2010) Federico Abascal et al. NUCLEIC ACIDS RESEARCH
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Fast model-based estimation of ancestry in unrelated individuals
- (2009) D. H. Alexander et al. GENOME RESEARCH
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started