Cis-regulatory chromatin loops arise before TADs and gene activation, and are independent of cell fate during early Drosophila development
出版年份 2021 全文链接
标题
Cis-regulatory chromatin loops arise before TADs and gene activation, and are independent of cell fate during early Drosophila development
作者
关键词
-
出版物
NATURE GENETICS
Volume 53, Issue 4, Pages 477-486
出版商
Springer Science and Business Media LLC
发表日期
2021-04-02
DOI
10.1038/s41588-021-00816-z
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning
- (2021) Elizabeth Ing-Simmons et al. NATURE GENETICS
- Chromosome Conformation Capture and Beyond: Toward an Integrative View of Chromosome Structure and Function
- (2020) Rachel Patton McCord et al. MOLECULAR CELL
- Direct and simultaneous observation of transcription and chromosome architecture in single cells with Hi-M
- (2020) Andrés M. Cardozo Gizzi et al. Nature Protocols
- Widespread activation of developmental gene expression characterized by PRC1-dependent chromatin looping
- (2020) V. Loubiere et al. Science Advances
- Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding
- (2020) Tsung-Han S. Hsieh et al. MOLECULAR CELL
- The emergence of genome architecture and zygotic genome activation
- (2020) Antoine Vallot et al. CURRENT OPINION IN CELL BIOLOGY
- Enhancer-promoter communication: hubs or loops?
- (2020) Bomyi Lim et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Positive and Negative Control of Enhancer-Promoter Interactions by Other DNA Loops Generates Specificity and Tunability
- (2019) Nan Hao et al. Cell Reports
- Visualizing DNA folding and RNA in embryos at single-cell resolution
- (2019) Leslie J. Mateo et al. NATURE
- Microscopy-Based Chromosome Conformation Capture Enables Simultaneous Visualization of Genome Organization and Transcription in Intact Organisms
- (2019) Andrés M. Cardozo Gizzi et al. MOLECULAR CELL
- Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization
- (2019) Elizabeth H. Finn et al. CELL
- Live-cell imaging reveals enhancer-dependent Sox2 transcription in the absence of enhancer proximity
- (2019) Jeffrey M Alexander et al. eLife
- Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression
- (2019) Yad Ghavi-Helm et al. NATURE GENETICS
- Preformed chromatin topology assists transcriptional robustness of Shh during limb development
- (2019) Christina Paliou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multi-enhancer transcriptional hubs confer phenotypic robustness
- (2019) Albert Tsai et al. eLife
- Decreased Enhancer-Promoter Proximity Accompanying Enhancer Activation
- (2019) Nezha S. Benabdallah et al. MOLECULAR CELL
- Transcriptional Silencers in Drosophila Serve a Dual Role as Transcriptional Enhancers in Alternate Cellular Contexts
- (2019) Stephen S. Gisselbrecht et al. MOLECULAR CELL
- Chromatin structure dynamics during the mitosis-to-G1 phase transition
- (2019) Haoyue Zhang et al. NATURE
- A revised model for promoter competition based on multi-way chromatin interactions at the α-globin locus
- (2019) A. Marieke Oudelaar et al. Nature Communications
- Exploring Mammalian Genome within Phase-Separated Nuclear Bodies: Experimental Methods and Implications for Gene Expression
- (2019) Annick Lesne et al. Genes
- Visualization of Transvection in Living Drosophila Embryos
- (2018) Bomyi Lim et al. MOLECULAR CELL
- Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development
- (2018) Yuki Ogiyama et al. MOLECULAR CELL
- Enhancer hubs and loop collisions identified from single-allele topologies
- (2018) Amin Allahyar et al. NATURE GENETICS
- Imaging dynamic and selective low-complexity domain interactions that control gene transcription
- (2018) Shasha Chong et al. SCIENCE
- Transcription-coupled changes in nuclear mobility of mammalian cis-regulatory elements
- (2018) Bo Gu et al. SCIENCE
- Coactivator condensation at super-enhancers links phase separation and gene control
- (2018) Benjamin R. Sabari et al. SCIENCE
- Mediator and RNA polymerase II clusters associate in transcription-dependent condensates
- (2018) Won-Ki Cho et al. SCIENCE
- Dynamic interplay between enhancer–promoter topology and gene activity
- (2018) Hongtao Chen et al. NATURE GENETICS
- Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains
- (2018) Ann Boija et al. CELL
- High-salt–recovered sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies
- (2018) Marie-Odile Baudement et al. GENOME RESEARCH
- Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation
- (2018) Caroline R. Bartman et al. MOLECULAR CELL
- Genomic encoding of transcriptional burst kinetics
- (2018) Anton J. M. Larsson et al. NATURE
- Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains
- (2018) A. Marieke Oudelaar et al. NATURE GENETICS
- Mechanisms regulating zygotic genome activation
- (2018) Katharine N. Schulz et al. NATURE REVIEWS GENETICS
- REDfly: the transcriptional regulatory element database for Drosophila
- (2018) John Rivera et al. NUCLEIC ACIDS RESEARCH
- Temporal control of gene expression by the pioneer factor Zelda through transient interactions in hubs
- (2018) Jeremy Dufourt et al. Nature Communications
- Dynamic multifactor hubs interact transiently with sites of active transcription in Drosophila embryos
- (2018) Mustafa Mir et al. eLife
- Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation
- (2017) Adam J Rubin et al. NATURE GENETICS
- Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map
- (2017) Kyle P. Eagen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions
- (2017) Diego I. Cattoni et al. Nature Communications
- Manipulation of nuclear architecture through CRISPR-mediated chromosomal looping
- (2017) Stefanie L. Morgan et al. Nature Communications
- A conserved maternal-specific repressive domain in Zelda revealed by Cas9-mediated mutagenesis in Drosophila melanogaster
- (2017) Danielle C. Hamm et al. PLoS Genetics
- Nuclear microenvironments modulate transcription from low-affinity enhancers
- (2017) Albert Tsai et al. eLife
- Concentration dependent chromatin states induced by the bicoid morphogen gradient
- (2017) Colleen E Hannon et al. eLife
- Enhancer Control of Transcriptional Bursting
- (2016) Takashi Fukaya et al. CELL
- 3D Chromosome Regulatory Landscape of Human Pluripotent Cells
- (2016) Xiong Ji et al. Cell Stem Cell
- Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping
- (2016) Caroline R. Bartman et al. MOLECULAR CELL
- Super-resolution imaging reveals distinct chromatin folding for different epigenetic states
- (2016) Alistair N. Boettiger et al. NATURE
- Regulation of the BMP Signaling-Responsive Transcriptional Network in the Drosophila Embryo
- (2016) Lisa Deignan et al. PLoS Genetics
- Establishment and maintenance of heritable chromatin structure during early Drosophila embryogenesis
- (2016) Shelby A Blythe et al. eLife
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2015) Suhas S.P. Rao et al. CELL
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- (2015) Darío G. Lupiáñez et al. CELL
- CTCF-dependent co-localization of canonical Smad signaling factors at architectural protein binding sites inD. melanogaster
- (2015) Kevin Van Bortle et al. CELL CYCLE
- Zelda overcomes the high intrinsic nucleosome barrier at enhancers duringDrosophilazygotic genome activation
- (2015) Yujia Sun et al. GENOME RESEARCH
- Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the earlyDrosophilaembryo
- (2015) Katharine N. Schulz et al. GENOME RESEARCH
- Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
- (2014) Jill M. Dowen et al. CELL
- The architecture of gene expression: integrating dispersed cis-regulatory modules into coherent regulatory domains
- (2014) Wibke Schwarzer et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Functional and topological characteristics of mammalian regulatory domains
- (2014) O. Symmons et al. GENOME RESEARCH
- Enhancer loops appear stable during development and are associated with paused polymerase
- (2014) Yad Ghavi-Helm et al. NATURE
- Genome-scale functional characterization of Drosophila developmental enhancers in vivo
- (2014) Evgeny Z. Kvon et al. NATURE
- 3D genome reconstruction from chromosomal contacts
- (2014) Annick Lesne et al. NATURE METHODS
- Transcription Factors Modulate c-Fos Transcriptional Bursts
- (2014) Adrien Senecal et al. Cell Reports
- Maternal control of the Drosophila dorsal-ventral body axis
- (2014) David S. Stein et al. Wiley Interdisciplinary Reviews-Developmental Biology
- The Spatial Organization of the Human Genome
- (2013) Wendy A. Bickmore Annual Review of Genomics and Human Genetics
- Paused Pol II Coordinates Tissue Morphogenesis in the Drosophila Embryo
- (2013) Mounia Lagha et al. CELL
- Extensive polymerase pausing during Drosophila axis patterning enables high-level and pliable transcription
- (2013) A. Saunders et al. GENES & DEVELOPMENT
- Topology of mammalian developmental enhancers and their regulatory landscapes
- (2013) Wouter de Laat et al. NATURE
- Functional implications of genome topology
- (2013) Giacomo Cavalli et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A global change in RNA polymerase II pausing during the Drosophila midblastula transition
- (2013) Kai Chen et al. eLife
- Controlling Long-Range Genomic Interactions at a Native Locus by Targeted Tethering of a Looping Factor
- (2012) Wulan Deng et al. CELL
- Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
- (2012) Tom Sexton et al. CELL
- The long-range interaction landscape of gene promoters
- (2012) Amartya Sanyal et al. NATURE
- Transcriptional repression via antilooping in the Drosophila embryo
- (2012) V. S. Chopra et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes
- (2012) B. J. Beliveau et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Regulatory Archipelago Controls Hox Genes Transcription in Digits
- (2011) Thomas Montavon et al. CELL
- Functional and Mechanistic Diversity of Distal Transcription Enhancers
- (2011) Michael Bulger et al. CELL
- A cis-regulatory map of the Drosophila genome
- (2011) Nicolas Nègre et al. NATURE
- Temporal Coordination of Gene Networks by Zelda in the Early Drosophila Embryo
- (2011) Chung-Yi Nien et al. PLoS Genetics
- Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition
- (2011) Melissa M. Harrison et al. PLoS Genetics
- The Bicoid Morphogen System
- (2010) Aude Porcher et al. CURRENT BIOLOGY
- A conserved activation element in BMP signaling during Drosophila development
- (2009) Alexander Weiss et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- cis-Regulatory networks during development: a view of Drosophila
- (2008) Stefan Bonn et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila
- (2008) Hsiao-Lan Liang et al. NATURE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now