Binding interaction of glyphosate with glyphosate oxidoreductase and C–P lyase: Molecular docking and molecular dynamics simulation studies
出版年份 2020 全文链接
标题
Binding interaction of glyphosate with glyphosate oxidoreductase and C–P lyase: Molecular docking and molecular dynamics simulation studies
作者
关键词
Glyphosate oxidoreductase, C–P lyase, Glyphosate, Aminomethylphosphonic acid, Interaction mechanism
出版物
JOURNAL OF HAZARDOUS MATERIALS
Volume 409, Issue -, Pages 124927
出版商
Elsevier BV
发表日期
2020-12-31
DOI
10.1016/j.jhazmat.2020.124927
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Glyphosate uptake, translocation, resistance emergence in crops, analytical monitoring, toxicity and degradation: a review
- (2020) Simranjeet Singh et al. Environmental Chemistry Letters
- Biodegradation capabilities of acclimated activated sludge towards glyphosate: experimental study and kinetic modelling
- (2020) Dan Feng et al. BIOCHEMICAL ENGINEERING JOURNAL
- Kinetic study of glyphosate degradation in wet air oxidation conditions
- (2020) Dan Feng et al. CHEMOSPHERE
- Glyphosate: environmental fate and impact
- (2020) Stephen O. Duke WEED SCIENCE
- An Overview of Strobilurin Fungicide Degradation:Current Status and Future Perspective
- (2020) Yanmei Feng et al. Frontiers in Microbiology
- New Insights into the Microbial Degradation of D-Cyphenothrin in Contaminated Water/Soil Environments
- (2020) Yaohua Huang et al. Microorganisms
- Mechanism of allethrin biodegradation by a newly isolated Sphingomonas trueperi strain CW3 from wastewater sludge
- (2020) Pankaj Bhatt et al. BIORESOURCE TECHNOLOGY
- A dynamic simulation study of FDA drug from zinc database against COVID-19 main protease receptor
- (2020) Shalini Mathpal et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- Fate, eco-toxicological characteristics, and treatment processes applied to water polluted with glyphosate: A critical review
- (2019) Cristina Alejandra Villamar-Ayala et al. CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY
- Application of docking and active site analysis for enzyme linked biodegradation of textile dyes
- (2019) Shantkriti Srinivasan et al. ENVIRONMENTAL POLLUTION
- Biodegradation of 3-chloropropionic acid (3-CP) by Bacillus cereus WH2 and its in silico enzyme-substrate docking analysis
- (2019) Wafaa Hassan Muslem et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- Effects of glyphosate exposure on human health: Insights from epidemiological and in vitro studies
- (2019) Lidiane P. Agostini et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Glyphosate but not Roundup® harms earthworms (Eisenia fetida)
- (2019) Sharon Pochron et al. CHEMOSPHERE
- Acclimation alters glyphosate temperature-dependent toxicity: Implications for risk assessment under climate change
- (2019) Laís C.M. Silva et al. JOURNAL OF HAZARDOUS MATERIALS
- Cytotoxic evaluation of glyphosate, using Allium cepa L. as bioindicator
- (2019) Seir Antonio Salazar Mercado et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Recent advances in glyphosate biodegradation
- (2018) Hui Zhan et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Molecular assessment of glyphosate-degradation pathway via sarcosine intermediate in Lysinibacillus sphaericus
- (2018) Laura E. González-Valenzuela et al. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH
- Kinetic, spectroscopic and computational docking study of the inhibitory effect of the pesticides 2,4,5-T, 2,4-D and glyphosate on the diphenolase activity of mushroom tyrosinase
- (2018) Vibol Sok et al. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
- Rapid Sampling of Hydrogen Bond Networks for Computational Protein Design
- (2018) Jack B. Maguire et al. Journal of Chemical Theory and Computation
- Effect of surfactants on the interaction of phenol with laccase: Molecular docking and molecular dynamics simulation studies
- (2018) Yujie Liu et al. JOURNAL OF HAZARDOUS MATERIALS
- Structural flexibility and protein adaptation to temperature: Molecular dynamics analysis of malate dehydrogenases of marine molluscs
- (2018) Yun-wei Dong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Environmental and health effects of the herbicide glyphosate
- (2018) A.H.C. Van Bruggen et al. SCIENCE OF THE TOTAL ENVIRONMENT
- How Molecular Size Impacts RMSD Applications in Molecular Dynamics Simulations
- (2017) Karen Sargsyan et al. Journal of Chemical Theory and Computation
- Glyphosate Use and Cancer Incidence in the Agricultural Health Study
- (2017) Gabriella Andreotti et al. JNCI-Journal of the National Cancer Institute
- Aldo-keto reductase enzymes detoxify glyphosate and improve herbicide resistance in plants
- (2017) Ramu S. Vemanna et al. PLANT BIOTECHNOLOGY JOURNAL
- Similarities and differences in occurrence and temporal fluctuations in glyphosate and atrazine in small Midwestern streams (USA) during the 2013 growing season
- (2017) Barbara J. Mahler et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Glyphosate Use and Cancer Incidence in the Agricultural Health Study
- (2017) Gabriella Andreotti et al. JNCI-Journal of the National Cancer Institute
- Interaction of carbon nanotubes with microbial enzymes: conformational transitions and potential toxicity
- (2017) Ming Chen et al. Environmental Science-Nano
- Evolutionary, computational and biochemical studies of the salicylaldehyde dehydrogenases in the naphthalene degradation pathway
- (2017) Baolei Jia et al. Scientific Reports
- Using the PyMOL application to reinforce visual understanding of protein structure
- (2016) Rachel E. Rigsby et al. BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION
- Changes in rhizosphere bacterial gene expression following glyphosate treatment
- (2016) Molli M. Newman et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Structures of the Carbon-Phosphorus Lyase Complex Reveal the Binding Mode of the NBD-like PhnK
- (2016) Kailu Yang et al. STRUCTURE
- Molecular mechanism of carbon nanotube to activate Subtilisin Carlsberg in polar and non-polar organic media
- (2016) Liyun Zhang et al. Scientific Reports
- Regulation of protein-ligand binding affinity by hydrogen bond pairing
- (2016) D. Chen et al. Science Advances
- Trends in glyphosate herbicide use in the United States and globally
- (2016) Charles M. Benbrook Environmental Sciences Europe
- Structural insights into the bacterial carbon–phosphorus lyase machinery
- (2015) Paulina Seweryn et al. NATURE
- The Phyre2 web portal for protein modeling, prediction and analysis
- (2015) Lawrence A Kelley et al. Nature Protocols
- g_mmpbsa—A GROMACS Tool for High-Throughput MM-PBSA Calculations
- (2014) Rashmi Kumari et al. Journal of Chemical Information and Modeling
- Efficient Characterization of Protein Cavities within Molecular Simulation Trajectories: trj_cavity
- (2014) Teresa Paramo et al. Journal of Chemical Theory and Computation
- Utilization of Glyphosate as Phosphate Source: Biochemistry and Genetics of Bacterial Carbon-Phosphorus Lyase
- (2014) B. Hove-Jensen et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
- (2013) Sander Pronk et al. BIOINFORMATICS
- New bacterial strain of the genusOchrobactrumwith glyphosate-degrading activity
- (2013) Faranak Hadi et al. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART B-PESTICIDES FOOD CONTAMINANTS AND AGRICULTURAL WASTES
- Distribution of glyphosate and methylphosphonate catabolism systems in soil bacteria Ochrobactrum anthropi and Achromobacter sp
- (2011) Alexey V. Sviridov et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Five phosphonate operon gene products as components of a multi-subunit complex of the carbon-phosphorus lyase pathway
- (2011) B. Jochimsen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Determination of Ensemble-Average Pairwise Root Mean-Square Deviation from Experimental B-Factors
- (2010) Antonija Kuzmanic et al. BIOPHYSICAL JOURNAL
- Glyphosate degradation in water employing the H2O2/UVC process
- (2010) A. Manassero et al. WATER RESEARCH
- Photocatalytic degradation of organophosphate and phosphonoglycine pesticides using TiO2 immobilized on silica gel
- (2009) Glory Rose Mangat Echavia et al. CHEMOSPHERE
- Accumulation of Intermediates of the Carbon-Phosphorus Lyase Pathway for Phosphonate Degradation in phn Mutants of Escherichia coli
- (2009) B. Hove-Jensen et al. JOURNAL OF BACTERIOLOGY
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