Next Generation Cereal Crop Yield Enhancement: From Knowledge of Inflorescence Development to Practical Engineering by Genome Editing

sgRNACNN: identifying sgRNA on-target activity in four crops using ensembles of convolutional neural networks

(2021) Mengting Niu et al.   PLANT MOLECULAR BIOLOGY

Short and Long Term Challenges in Crop Breeding

(2021) Hong Yu et al.   National Science Review

Haploid induction by a maize cenh3 null mutant

(2021) Na Wang et al.   Science Advances

A route to de novo domestication of wild allotetraploid rice

(2021) Hong Yu et al.   CELL

Conserved pleiotropy of an ancient plant homeobox gene uncovered by cis-regulatory dissection

(2021) Anat Hendelman et al.   CELL

Haploid induction and its application in maize breeding

(2021) Dexuan Meng et al.   MOLECULAR BREEDING

CRISPR-Cas technology in corn: a new key to unlock genetic knowledge and create novel products

(2021) Michael L Nuccio et al.   MOLECULAR BREEDING

Nanotechnology to advance CRISPR–Cas genetic engineering of plants

(2021) Gozde S. Demirer et al.   Nature Nanotechnology

Seeing is believing: a visualization toolbox to enhance selection efficiency in maize genome editing

(2021) Jieting Xu et al.   PLANT BIOTECHNOLOGY JOURNAL

Modification of cereal plant architecture by genome editing to improve yields

(2021) Xin Huang et al.   PLANT CELL REPORTS

Synergizing Off-Target Predictions for In Silico Insights of CENH3 Knockout in Cannabis through CRISPR/Cas

(2021) Mohsen Hesami et al.   MOLECULES

High-efficiency prime editing with optimized, paired pegRNAs in plants

(2021) Qiupeng Lin et al.   NATURE BIOTECHNOLOGY

Production of novel beneficial alleles of a rice yield‐related QTL by CRISPR/Cas9

(2020) Yongtao Cui et al.   PLANT BIOTECHNOLOGY JOURNAL

High-Throughput CRISPR/Cas9 Mutagenesis Streamlines Trait Gene Identification in Maize

(2020) Haijun Liu et al.   PLANT CELL

Mapping-by-Sequencing via MutMap Identifies a Mutation in ZmCLE7 Underlying Fasciation in a Newly Developed EMS Mutant Population in an Elite Tropical Maize Inbred

(2020) Quan Hong Tran et al.   Genes

Combining Medicinal Plant In Vitro Culture with Machine Learning Technologies for Maximizing the Production of Phenolic Compounds

(2020) Pascual García-Pérez et al.   Antioxidants

Optimization of salicylic acid and chitosan treatment for bitter secoiridoid and xanthone glycosides production in shoot cultures of Swertia paniculata using response surface methodology and artificial neural network

(2020) Prabhjot Kaur et al.   BMC PLANT BIOLOGY

Prime genome editing in rice and wheat

(2020) Qiupeng Lin et al.   NATURE BIOTECHNOLOGY

Site‐directed mutagenesis in bread and durum wheat via pollination by cas9 /guide RNA‐transgenic maize used as haploidy inducer

(2020) Nagaveni Budhagatapalli et al.   PLANT BIOTECHNOLOGY JOURNAL

UNBRANCHED3 Expression and Inflorescence Development is Mediated by UNBRANCHED2 and the Distal Enhancer, KRN4, in Maize

(2020) Yanfang Du et al.   PLoS Genetics

Complex Trait Loci in Maize Enabled by CRISPR-Cas9 Mediated Gene Insertion

(2020) Huirong Gao et al.   Frontiers in Plant Science

Efficient Gene Targeting in Maize Using Inducible CRISPR-Cas9 and Marker-free Donor Template

(2020) Pierluigi Barone et al.   Molecular Plant

Application of artificial intelligence models and optimization algorithms in plant cell and tissue culture

(2020) Mohsen Hesami et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A GRF–GIF chimeric protein improves the regeneration efficiency of transgenic plants

(2020) Juan M. Debernardi et al.   NATURE BIOTECHNOLOGY

Forecasting and optimizing Agrobacterium-mediated genetic transformation via ensemble model- fruit fly optimization algorithm: A data mining approach using chrysanthemum databases

(2020) Mohsen Hesami et al.   PLoS One

Overexpression of the Transcription Factor GROWTH-REGULATING FACTOR5 Improves Transformation of Dicot and Monocot Species

(2020) Jixiang Kong et al.   Frontiers in Plant Science

A viral guide RNA delivery system for CRISPR-based transcriptional activation and heritable targeted DNA demethylation in Arabidopsis thaliana

(2020) Basudev Ghoshal et al.   PLoS Genetics

Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems

(2019) Ashot Papikian et al.   Nature Communications

One-step genome editing of elite crop germplasm during haploid induction

(2019) Timothy Kelliher et al.   NATURE BIOTECHNOLOGY

Development of a Haploid-Inducer Mediated Genome Editing System for Accelerating Maize Breeding

(2019) Baobao Wang et al.   Molecular Plant

De Novo Domestication: An Alternative Route toward New Crops for the Future

(2019) Alisdair R. Fernie et al.   Molecular Plant

Evolution of buffering in a genetic circuit controlling plant stem cell proliferation

(2019) Daniel Rodriguez-Leal et al.   NATURE GENETICS

Strong gene activation in plants with genome‐wide specificity using a new orthogonal CRISPR /Cas9‐based programmable transcriptional activator

(2019) Sara Selma et al.   PLANT BIOTECHNOLOGY JOURNAL

CRISPR/Cas-Mediated Base Editing: Technical Considerations and Practical Applications

(2019) Kutubuddin A. Molla et al.   TRENDS IN BIOTECHNOLOGY

Architecture of Wheat Inflorescence: Insights from Rice

(2019) Xin-Qi Gao et al.   TRENDS IN PLANT SCIENCE

Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice

(2019) Wakana Tanaka et al.   NEW PHYTOLOGIST

Search-and-replace genome editing without double-strand breaks or donor DNA

(2019) Andrew V. Anzalone et al.   NATURE

An improved recombineering toolset for plants

(2019) Javier Brumos et al.   PLANT CELL

An efficient and reproducible Agrobacterium-mediated transformation method for hexaploid wheat (Triticum aestivum L.)

(2019) Sadiye Hayta et al.   Plant Methods

The regulatory landscape of a core maize domestication module controlling bud dormancy and growth repression

(2019) Zhaobin Dong et al.   Nature Communications

Plant gene editing through de novo induction of meristems

(2019) Michael F. Maher et al.   NATURE BIOTECHNOLOGY

The maize heterotrimeric G protein β subunit controls shoot meristem development and immune responses

(2019) Qingyu Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

All together now, a magical mystery tour of the maize shoot meristem

(2018) Qingyu Wu et al.   CURRENT OPINION IN PLANT BIOLOGY

Rapid genotype “independent” Zea mays L. (maize) transformation via direct somatic embryogenesis

(2018) Keith Lowe et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT

Robust Transcriptional Activation in Plants Using Multiplexed CRISPR-Act2.0 and mTALE-Act Systems

(2018) Levi G. Lowder et al.   Molecular Plant

Genetic and Molecular Mechanisms of Quantitative Trait Loci Controlling Maize Inflorescence Architecture

(2018) Manfei Li et al.   PLANT AND CELL PHYSIOLOGY

TEOSINTE BRANCHED1Regulates Inflorescence Architecture and Development in Bread Wheat (Triticum aestivum)

(2018) Laura E. Dixon et al.   PLANT CELL

Targeted DNA demethylation of theArabidopsisgenome using the human TET1 catalytic domain

(2018) Javier Gallego-Bartolomé et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Grass inflorescence architecture and meristem determinacy

(2018) Peter Bommert et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The CLAVATA receptor FASCIATED EAR2 responds to distinct CLE peptides by signaling through two downstream effectors

(2018) Byoung Il Je et al.   eLife

The Impact of Genetic Changes during Crop Domestication

(2018) Petr Smýkal et al.   Agronomy-Basel

Genome Editing and Double-Fluorescence Proteins Enable Robust Maternal Haploid Induction and Identification in Maize

(2018) Le Dong et al.   Molecular Plant

Interaction between row-type genes in barley controls meristem determinacy and reveals novel routes to improved grain

(2018) Monika Zwirek et al.   NEW PHYTOLOGIST

Precise Editing of a Target Base in the Rice Genome Using a Modified CRISPR/Cas9 System

(2017) Yuming Lu et al.   Molecular Plant

A 4-bp Insertion at ZmPLA1 Encoding a Putative Phospholipase A Generates Haploid Induction in Maize

(2017) Chenxu Liu et al.   Molecular Plant

Generation of Targeted Point Mutations in Rice by a Modified CRISPR/Cas9 System

(2017) Jingying Li et al.   Molecular Plant

MATRILINEAL, a sperm-specific phospholipase, triggers maize haploid induction

(2017) Timothy Kelliher et al.   NATURE

Precise base editing in rice, wheat and maize with a Cas9-cytidine deaminase fusion

(2017) Yuan Zong et al.   NATURE BIOTECHNOLOGY

UNBRANCHED3 regulates branching by modulating cytokinin biosynthesis and signaling in maize and rice

(2017) Yanfang Du et al.   NEW PHYTOLOGIST

Selectable marker independent transformation of recalcitrant maize inbred B73 and sorghum P898012 mediated by morphogenic regulators BABY BOOM and WUSCHEL2

(2017) Muruganantham Mookkan et al.   PLANT CELL REPORTS

Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley

(2017) G. Wilma van Esse et al.   PLANT PHYSIOLOGY

miR156-Targeted SBP-Box Transcription Factors Interact with DWARF53 to Regulate TEOSINTE BRANCHED1 and BARREN STALK1 Expression in Bread Wheat

(2017) Jie Liu et al.   PLANT PHYSIOLOGY

Characteristics of Genome Editing Mutations in Cereal Crops

(2017) Changfu Zhu et al.   TRENDS IN PLANT SCIENCE

An in planta biolistic method for stable wheat transformation

(2017) Haruyasu Hamada et al.   Scientific Reports

VRS2 regulates hormone-mediated inflorescence patterning in barley

(2016) Helmy M Youssef et al.   NATURE GENETICS

Signaling from maize organ primordia via FASCIATED EAR3 regulates stem cell proliferation and yield traits

(2016) Byoung Il Je et al.   NATURE GENETICS

Generation of marker-free transgenic hexaploid wheat via an Agrobacterium -mediated co-transformation strategy in commercial Chinese wheat varieties

(2016) Ke Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Morphogenic Regulators Baby boom and Wuschel Improve Monocot Transformation

(2016) Keith Lowe et al.   PLANT CELL

Reassessment of the Four Yield-related Genes Gn1a, DEP1, GS3, and IPA1 in Rice Using a CRISPR/Cas9 System

(2016) Meiru Li et al.   Frontiers in Plant Science

Genome-wide dissection of the maize ear genetic architecture using multiple populations

(2015) Yingjie Xiao et al.   NEW PHYTOLOGIST

Coordinated regulation of vegetative and reproductive branching in rice

(2015) Lei Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic architecture of maize kernel row number and whole genome prediction

(2015) Lei Liu et al.   THEORETICAL AND APPLIED GENETICS

KRN4 Controls Quantitative Variation in Maize Kernel Row Number

(2015) Lei Liu et al.   PLoS Genetics

Heterotrimeric G proteins regulate nitrogen-use efficiency in rice

(2014) Hongying Sun et al.   NATURE GENETICS

MaizeSBP-boxtranscription factorsunbranched2andunbranched3affect yield traits by regulating the rate of lateral primordia initiation

(2014) George S. Chuck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The maize Gα gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size

(2013) Peter Bommert et al.   NATURE

Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus

(2013) Peter Bommert et al.   NATURE GENETICS

Grass Meristems II: Inflorescence Architecture, Flower Development and Meristem Fate

(2013) Wakana Tanaka et al.   PLANT AND CELL PHYSIOLOGY

Genome-Wide Binding Analysis of the Transcription Activator IDEAL PLANT ARCHITECTURE1 Reveals a Complex Network Regulating Rice Plant Architecture

(2013) Z. Lu et al.   PLANT CELL

Six-rowed spike4 (Vrs4) controls spikelet determinacy and row-type in barley

(2013) R. Koppolu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From Many, One: Genetic Control of Prolificacy during Maize Domestication

(2013) David M. Wills et al.   PLoS Genetics

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

(2012) M. Jinek et al.   SCIENCE

INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1

(2011) Luke Ramsay et al.   NATURE GENETICS

Identification of a functional transposon insertion in the maize domestication gene tb1

(2011) Anthony Studer et al.   NATURE GENETICS

grassy tillers1 promotes apical dominance in maize and responds to shade signals in the grasses

(2011) C. J. Whipple et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct Genetic Architectures for Male and Female Inflorescence Traits of Maize

(2011) Patrick J. Brown et al.   PLoS Genetics

Genetic and Molecular Bases of Rice Yield

(2010) Yongzhong Xing et al.   Annual Review of Plant Biology

Branching in rice

(2010) Yonghong Wang et al.   CURRENT OPINION IN PLANT BIOLOGY

Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice

(2010) Yongqing Jiao et al.   NATURE GENETICS

OsSPL14 promotes panicle branching and higher grain productivity in rice

(2010) Kotaro Miura et al.   NATURE GENETICS

Natural variation at the DEP1 locus enhances grain yield in rice

(2009) Xianzhong Huang et al.   NATURE GENETICS

Differential Expression of WOX Genes Mediates Apical-Basal Axis Formation in the Arabidopsis Embryo

(2008) Holger Breuninger et al.   DEVELOPMENTAL CELL

The co-operation between intermedium genes and the six-row gene hex-v in a six-row variety of barley

(2008) UDDA LUNDQVIST et al.   HEREDITAS

The Making of a Compound Inflorescence in Tomato and Related Nightshades

(2008) Zachary B Lippman et al.   PLOS BIOLOGY