Transcriptomic dissection of the rice–Fusarium fujikuroi interaction by RNA-Seq

Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus

(2016) Amandine Delteil et al.   BMC PLANT BIOLOGY

Mapping of qBK1, a major QTL for bakanae disease resistance in rice

(2015) Yeon-Jae Hur et al.   MOLECULAR BREEDING

Transcriptomic dissection of the rice – Burkholderia glumae interaction

(2014) Zenaida V Magbanua et al.   BMC GENOMICS

Large-scale screening of rice accessions to evaluate resistance to bakanae disease

(2014) Myung-Hee Kim et al.   JOURNAL OF GENERAL PLANT PATHOLOGY

Rice WRKY13 Regulates Cross Talk between Abiotic and Biotic Stress Signaling Pathways by Selective Binding to Different cis-Elements

(2013) J. Xiao et al.   PLANT PHYSIOLOGY

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites

(2013) Philipp Wiemann et al.   PLoS Pathogens

GmPOI gene encoding a Pollen_Ole_e_I conserved domain is involved in response of soybean to various stresses

(2012) W. W. Song et al.   BIOLOGIA PLANTARUM

Simultaneous RNA-Seq Analysis of a Mixed Transcriptome of Rice and Blast Fungus Interaction

(2012) Yoshihiro Kawahara et al.   PLoS One

Susceptibility of rice to sheath blight: an assessment of the diversity of rice germplasm according to genetic groups and morphological traits

(2011) L. Willocquet et al.   EUPHYTICA

Innate immunity in rice

(2011) Xuewei Chen et al.   TRENDS IN PLANT SCIENCE

Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.)

(2010) Hiroshi Mizuno et al.   BMC GENOMICS

Differentiation and distribution of indica and japonica rice varieties along the altitude gradients in Yunnan Province of China as revealed by InDel molecular markers

(2010) Zhiyuan Xiong et al.   GENETIC RESOURCES AND CROP EVOLUTION

Molecular identification of Fusarium spp. associated with bakanae disease of rice in Italy and assessment of their pathogenicity

(2010) M. T. Amatulli et al.   PLANT PATHOLOGY

Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome

(2010) Keyan Zhao et al.   PLoS One

High-Throughput SuperSAGE for Digital Gene Expression Analysis of Multiple Samples Using Next Generation Sequencing

(2010) Hideo Matsumura et al.   PLoS One

Mechanisms underlying beneficial plant–fungus interactions in mycorrhizal symbiosis

(2010) Paola Bonfante et al.   Nature Communications

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Fusariumspp. associated with rice Bakanae: ecology, genetic diversity, pathogenicity and toxigenicity

(2009) Ednar G. Wulff et al.   ENVIRONMENTAL MICROBIOLOGY

Identification of a New Rice Blast Resistance Gene, Pid3 , by Genomewide Comparison of Paired Nucleotide-Binding Site–Leucine-Rich Repeat Genes and Their Pseudogene Alleles Between the Two Sequenced Rice Genomes

(2009) Junjun Shang et al.   GENETICS

Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection

(2009) M. Libault et al.   PLANT PHYSIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Identification of drought-responsive genes in roots of upland rice (Oryza sativa L)

(2008) Aline R Rabello et al.   BMC GENOMICS

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE