Sediment archives reveal irreversible shifts in plankton communities after World War II and agricultural pollution

Blooms of Toxic Cyanobacterium Nodularia spumigena in Norwegian Fjords During Holocene Warm Periods

(2020) Robert Konkel et al.   Toxins

Assessing the response of micro-eukaryotic diversity to the Great Acceleration using lake sedimentary DNA

(2020) François Keck et al.   Nature Communications

Anthropogenic impact on the historical phytoplankton community of Lake Constance reconstructed by multimarker analysis of sediment‐core environmental DNA

(2020) Anan Ibrahim et al.   MOLECULAR ECOLOGY

Using paleo-archives to safeguard biodiversity under climate change

(2020) Damien A. Fordham et al.   SCIENCE

Sedimentary ancient DNA metabarcoding delineates the contrastingly temporal change of lake cyanobacterial communities

(2020) Xiaofeng Cao et al.   WATER RESEARCH

Coupling between taxonomic and functional diversity in protistan coastal communities

(2019) Pierre Ramond et al.   ENVIRONMENTAL MICROBIOLOGY

Global change drives modern plankton communities away from the pre-industrial state

(2019) Lukas Jonkers et al.   NATURE

The potential of sedimentary ancient DNA for reconstructing past sea ice evolution

(2019) Stijn De Schepper et al.   ISME Journal

How Does Environmental Inter-annual Variability Shape Aquatic Microbial Communities? A 40-Year Annual Record of Sedimentary DNA From a Boreal Lake (Nylandssjön, Sweden)

(2019) Eric Capo et al.   Frontiers in Ecology and Evolution

Ancient DNA from marine sediments: Precautions and considerations for seafloor coring, sample handling and data generation

(2019) Linda H. Armbrecht et al.   EARTH-SCIENCE REVIEWS

Ocean community warming responses explained by thermal affinities and temperature gradients

(2019) Michael T. Burrows et al.   Nature Climate Change

Assessing the Diversity and Distribution of Apicomplexans in Host and Free-Living Environments Using High-Throughput Amplicon Data and a Phylogenetically Informed Reference Framework

(2019) Javier del Campo et al.   Frontiers in Microbiology

Trace metal effects on gross primary productivity and its associative environmental risk assessment in a subtropical lake, China

(2019) Junjie Jia et al.   ENVIRONMENTAL POLLUTION

A 43 kyr record of protist communities and their response to oxygen minimum zone variability in the Northeastern Arabian Sea

(2018) Kuldeep D. More et al.   EARTH AND PLANETARY SCIENCE LETTERS

Human-induced river runoff overlapping natural climate variability over the last 150 years: Palynological evidence (Bay of Brest, NW France)

(2018) Clément Lambert et al.   GLOBAL AND PLANETARY CHANGE

Trace metal contamination as a toxic and structuring factor impacting ultraphytoplankton communities in a multicontaminated Mediterranean coastal area

(2018) Clément Coclet et al.   PROGRESS IN OCEANOGRAPHY

Fish life-history traits are affected after chronic dietary exposure to an environmentally realistic marine mixture of PCBs and PBDEs

(2018) Khaled Horri et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems

(2018) Jan Pawlowski et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Environmental DNA Time Series in Ecology

(2018) Miklós Bálint et al.   TRENDS IN ECOLOGY & EVOLUTION

Sedimentary and egg-bank DNA from 3 European lakes reveal concurrent changes in the composition and diversity of cyanobacterial and Daphnia communities

(2017) Marie-Eve Monchamp et al.   HYDROBIOLOGIA

To what extent is the DNA of microbial eukaryotes modified during burying into lake sediments? A repeat-coring approach on annually laminated sediments

(2017) Eric Capo et al.   JOURNAL OF PALEOLIMNOLOGY

Control factors of Holocene sedimentary infilling in a semi-closed tidal estuarine-like system: the bay of Brest (France)

(2017) Gwendoline Gregoire et al.   MARINE GEOLOGY

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests

(2017) Frédéric Mahé et al.   Nature Ecology & Evolution

Long-term dynamics in microbial eukaryotes communities: a palaeolimnological view based on sedimentary DNA

(2016) Eric Capo et al.   MOLECULAR ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

An Improved Quantitative Real-Time PCR Assay for the Enumeration of Heterosigma akashiwo (Raphidophyceae) Cysts Using a DNA Debris Removal Method and a Cyst-Based Standard Curve

(2016) Joo-Hwan Kim et al.   PLoS One

The Anthropocene is functionally and stratigraphically distinct from the Holocene

(2016) C. N. Waters et al.   SCIENCE

Extracellular DNA extraction is a fast, cheap and reliable alternative for multi-taxa surveys based on soil DNA

(2016) Lucie Zinger et al.   SOIL BIOLOGY & BIOCHEMISTRY

Temporal trends in cyanobacteria revealed through DNA and pigment analyses of temperate lake sediment cores

(2015) S. Pal et al.   JOURNAL OF PALEOLIMNOLOGY

Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes

(2015) A. Z. Worden et al.   SCIENCE

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Three-dimensional (3-D) fluorescence spectroscopy analysis of the fluorescent dissolved organic matter released by the marine toxic dinoflagellateAlexandrium catenellaexposed to metal stress by zinc or lead

(2014) Faouzi Herzi et al.   JOURNAL OF PHYCOLOGY

Identification of Photosynthetic Plankton Communities Using Sedimentary Ancient DNA and Their Response to late-Holocene Climate Change on the Tibetan Plateau

(2014) Weiguo Hou et al.   Scientific Reports

Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles

(2013) Ramon Massana et al.   ISME Journal

Phytoplankton phosphorus limitation in a North Atlantic coastal ecosystem not predicted by nutrient load

(2013) Gabriele Trommer et al.   JOURNAL OF PLANKTON RESEARCH

Framework for understanding marine ecosystem health

(2013) P Tett et al.   MARINE ECOLOGY PROGRESS SERIES

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene

(2013) M. J. L. Coolen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IntCal13 and Marine13 Radiocarbon Age Calibration Curves 0–50,000 Years cal BP

(2013) Paula J Reimer et al.   RADIOCARBON

Identifying active foraminifera in the Sea of Japan using metatranscriptomic approach

(2012) Franck Lejzerowicz et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Palaeoecological analysis of phytoplankton regime shifts in response to coastal eutrophication

(2012) D Liu et al.   MARINE ECOLOGY PROGRESS SERIES

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Hidden diversity in diatoms of Kenyan Lake Naivasha: a genetic approach detects temporal variation

(2012) KATHLEEN R. STOOF-LEICHSENRING et al.   MOLECULAR ECOLOGY

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Source-specific variability in post-depositional DNA preservation with potential implications for DNA based paleoecological records

(2011) Arjan C. Boere et al.   ORGANIC GEOCHEMISTRY

7000 Years of Emiliania huxleyi Viruses in the Black Sea

(2011) M. J. L. Coolen   SCIENCE

The Continuous Plankton Recorder: towards a global perspective

(2010) S. D. Batten et al.   JOURNAL OF PLANKTON RESEARCH

Global phytoplankton decline over the past century

(2010) Daniel G. Boyce et al.   NATURE

PCDD/F and PCB multi-media ambient concentrations, congener patterns and occurrence in a Mediterranean coastal lagoon (Etang de Thau, France)

(2008) J. Castro-Jiménez et al.   ENVIRONMENTAL POLLUTION