A novel essential protein identification method based on PPI networks and gene expression data

Random walk based method to identify essential proteins by integrating network topology and biological characteristics

(2019) Xiujuan Lei et al.   KNOWLEDGE-BASED SYSTEMS

A Novel Method for Identifying Essential Genes by Fusing Dynamic Protein–Protein Interactive Networks

(2019) Fengyu Zhang et al.   Genes

OUP accepted manuscript

(2018)   BIOINFORMATICS

XGBFEMF: An XGBoost-based Framework for Essential Protein Prediction

(2018) Jiancheng Zhong et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Identifying essential proteins based on sub-network partition and prioritization by integrating subcellular localization information

(2018) Min Li et al.   JOURNAL OF THEORETICAL BIOLOGY

On entropy and information in gene interaction networks

(2018) Z S Wallace et al.   BIOINFORMATICS

Predicting essential proteins based on subcellular localization, orthology and PPI networks

(2016) Gaoshi Li et al.   BMC BIOINFORMATICS

Identifying essential proteins from active PPI networks constructed with dynamic gene expression

(2015) Qianghua Xiao et al.   BMC GENOMICS

UDoNC: An Algorithm for Identifying Essential Proteins Based on Protein Domains and Protein-Protein Interaction Networks

(2015) Wei Peng et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Topology Potential-Based Method for Identifying Essential Proteins from PPI Networks

(2015) Min Li et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

The Yeast Deletion Collection: A Decade of Functional Genomics

(2014) Guri Giaever et al.   GENETICS

Effective identification of essential proteins based on priori knowledge, network topology and gene expressions

(2014) Min Li et al.   METHODS

Prediction of essential proteins using topological properties in GO-pruned PPI network based on machine learning methods

(2014) Wooyoung Kim   TSINGHUA SCIENCE AND TECHNOLOGY

Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks

(2012) Wei Peng et al.   BMC Systems Biology

A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data

(2012) Min Li et al.   BMC Systems Biology

IDENTIFICATION OF ESSENTIAL PROTEINS FROM WEIGHTED PROTEIN–PROTEIN INTERACTION NETWORKS

(2012) MIN LI et al.   Journal of Bioinformatics and Computational Biology

Identification of Essential Proteins Based on Edge Clustering Coefficient

(2011) Jianxin Wang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Investigating the predictability of essential genes across distantly related organisms using an integrative approach

(2010) Jingyuan Deng et al.   NUCLEIC ACIDS RESEARCH

Computational prediction of essential genes in an unculturable endosymbiotic bacterium, Wolbachia of Brugia malayi

(2009) Alexander G Holman et al.   BMC MICROBIOLOGY

Predicting essential genes based on network and sequence analysis

(2009) Yih-Chii Hwang et al.   Molecular BioSystems

DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes

(2008) R. Zhang et al.   NUCLEIC ACIDS RESEARCH

Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality

(2008) Elena Zotenko et al.   PLoS Computational Biology