A Matter of Scale: Population Genomic Structure and Connectivity of Fisheries At-Risk Common Dolphins (Delphinus delphis) From Australasia

Cetacean sighting records in the New Caledonia Basin, Tasman Sea, New Zealand

(2021) Katharina J. Peters et al.   NEW ZEALAND JOURNAL OF MARINE AND FRESHWATER RESEARCH

Dispersal Reduction: Causes, Genomic Mechanisms, and Evolutionary Consequences

(2020) J.M. Waters et al.   TRENDS IN ECOLOGY & EVOLUTION

Modelling habitat use suggests static spatial exclusion zones are a non-optimal management tool for a highly mobile marine mammal

(2020) Sarah L. Dwyer et al.   MARINE BIOLOGY

Occurrence of common dolphins ( Delphinus delphis ) in the Gulf of Trieste and the northern Adriatic Sea

(2020) Tilen Genov et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Genetic stock structure of New Zealand fish and the use of genomics in fisheries management: an overview and outlook

(2020) Yvan Papa et al.   NEW ZEALAND JOURNAL OF ZOOLOGY

IUCN Red List and the value of integrating genetics

(2020) Brittany A. Garner et al.   CONSERVATION GENETICS

Foraging ecology of the common dolphin Delphinus delphis revealed by stable isotope analysis

(2020) KJ Peters et al.   MARINE ECOLOGY PROGRESS SERIES

Ready-to-use workflows for the implementation of genetic tools in conservation management

(2020) Rolf Holderegger et al.   Conservation Genetics Resources

Aquatic Landscape Genomics and Environmental Effects on Genetic Variation

(2019) Jared A. Grummer et al.   TRENDS IN ECOLOGY & EVOLUTION

Technical mitigation to reduce marine mammal bycatch and entanglement in commercial fishing gear: lessons learnt and future directions

(2019) Sheryl Hamilton et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

How does temporal variation in habitat connectivity influence metapopulation dynamics?

(2019) George L. W. Perry et al.   OIKOS

A genomic approach to inferring kinship reveals limited intergenerational dispersal in the yellow fever mosquito

(2019) Moshe Jasper et al.   Molecular Ecology Resources

Long-Distance Benefits of Marine Reserves: Myth or Reality?

(2019) Stéphanie Manel et al.   TRENDS IN ECOLOGY & EVOLUTION

Asymmetric dispersal is a critical element of concordance between biophysical dispersal models and spatial genetic structure in Great Barrier Reef corals

(2019) Cynthia Riginos et al.   DIVERSITY AND DISTRIBUTIONS

The potential of genomics for restoring ecosystems and biodiversity

(2019) Martin F. Breed et al.   NATURE REVIEWS GENETICS

The importance of migratory connectivity for global ocean policy

(2019) Daniel C. Dunn et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Long-term trends and a risk analysis of cetacean entanglements and bycatch in fisheries gear in Australian waters

(2019) Vivitskaia Tulloch et al.   BIODIVERSITY AND CONSERVATION

Navigating the southern seas with small fins: Genetic connectivity of seahorses ( Hippocampus abdominalis ) across the Tasman Sea

(2019) Jimiane L. Ashe et al.   JOURNAL OF BIOGEOGRAPHY

Social Barriers in Ecological Landscapes: The Social Resistance Hypothesis

(2019) Nicolette C. Armansin et al.   TRENDS IN ECOLOGY & EVOLUTION

Using Haplotype Information for Conservation Genomics

(2019) Maeva Leitwein et al.   TRENDS IN ECOLOGY & EVOLUTION

Low genetic diversity, limited gene flow and widespread genetic bottleneck effects in a threatened dolphin species, the Australian humpback dolphin

(2018) Guido J. Parra et al.   BIOLOGICAL CONSERVATION

Hierarchical metapopulation structure in a highly mobile marine predator: the southern Australian coastal bottlenose dolphin (Tursiops cf. australis)

(2018) Eleanor A. L. Pratt et al.   CONSERVATION GENETICS

Recent advances in conservation and population genomics data analysis

(2018) S. Hendricks et al.   Evolutionary Applications

Inferring Continuous and Discrete Population Genetic Structure Across Space

(2018) Gideon S. Bradburd et al.   GENETICS

Asymmetric oceanographic processes mediate connectivity and population genetic structure, as revealed by RADseq, in a highly dispersive marine invertebrate (Parastichopus californicus )

(2018) Amanda Xuereb et al.   MOLECULAR ECOLOGY

Seascape genomics reveals adaptive divergence in a connected and commercially important mollusc, the greenlip abalone (Haliotis laevigata ), along a longitudinal environmental gradient

(2018) Jonathan Sandoval-Castillo et al.   MOLECULAR ECOLOGY

Challenges of implementing Mark-recapture studies on poorly marked gregarious delphinids

(2018) Krista Hupman et al.   PLoS One

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

A fast likelihood solution to the genetic clustering problem

(2018) Marie-Pauline Beugin et al.   Methods in Ecology and Evolution

Mitochondrial DNA is unsuitable to test for isolation by distance

(2018) Peter R. Teske et al.   Scientific Reports

Inferring Continuous and Discrete Population Genetic Structure Across Space

(2018) Gideon S. Bradburd et al.   GENETICS

Micronekton assemblages and bioregional setting of the Great Australian Bight: A temperate northern boundary current system

(2018) A.J. Flynn et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

The influence of selection on MHC DQA and DQB haplotypes in the endemic New Zealand Hector’s and Māui dolphins

(2018) Dorothea Heimeier et al.   JOURNAL OF HEREDITY

Examining the viability of dorsal fin pigmentation for individual identification of poorly-marked delphinids

(2018) M. D. M. Pawley et al.   Scientific Reports

Quantifying dispersal between marine protected areas by a highly mobile species, the bottlenose dolphin, Tursiops truncatus

(2018) Milaja Nykänen et al.   Ecology and Evolution

Seascape genomics of eastern oyster (Crassostrea virginica ) along the Atlantic coast of Canada

(2018) Simon Bernatchez et al.   Evolutionary Applications

Genome-wide association study of an unusual dolphin mortality event reveals candidate genes for susceptibility and resistance to cetacean morbillivirus

(2018) Kimberley C. Batley et al.   Evolutionary Applications

How vulnerable are cetaceans to climate change? Developing and testing a new index

(2018) A. Sousa et al.   ECOLOGICAL INDICATORS

Contrasting patterns of population structure and gene flow facilitate exploration of connectivity in two widely distributed temperate octocorals

(2017) L P Holland et al.   HEREDITY

Ensemble modelling of southern Australian bottlenose dolphin Tursiops sp. distribution reveals important habitats and their potential ecological function

(2017) N Zanardo et al.   MARINE ECOLOGY PROGRESS SERIES

A review of molecular genetic markers and analytical approaches that have been used for delimiting marine mammal subspecies and species

(2017) Patricia E. Rosel et al.   MARINE MAMMAL SCIENCE

Guidelines and quantitative standards to improve consistency in cetacean subspecies and species delimitation relying on molecular genetic data

(2017) Barbara L. Taylor et al.   MARINE MAMMAL SCIENCE

Seascape genomics reveals fine-scale patterns of dispersal for a reef fish along the ecologically divergent coast of Northwestern Australia

(2017) Joseph D. DiBattista et al.   MOLECULAR ECOLOGY

Marine biogeographic realms and species endemicity

(2017) Mark J. Costello et al.   Nature Communications

Ensemble modelling of southern Australian bottlenose dolphin Tursiops sp. distribution reveals important habitats and their potential ecological function

(2017) N Zanardo et al.   MARINE ECOLOGY PROGRESS SERIES

Larval fish dispersal in a coral-reef seascape

(2017) Glenn R. Almany et al.   Nature Ecology & Evolution

Occurrence, distribution and abundance of cetaceans off the western Eyre Peninsula in the Great Australian Bight

(2017) Kerstin Bilgmann et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies

(2016) Cynthia Riginos et al.   Current Zoology

Spatial genetic structure in the saddled sea bream (Oblada melanura [Linnaeus, 1758]) suggests multi-scaled patterns of connectivity between protected and unprotected areas in the Western Mediterranean Sea

(2016) Antonio Calò et al.   FISHERIES RESEARCH

An overview of Australia's temperate marine phylogeography, with new evidence from high-dispersal gastropods

(2016) Peter R. Teske et al.   JOURNAL OF BIOGEOGRAPHY

Genomic Methods Take the Plunge: Recent Advances in High-Throughput Sequencing of Marine Mammals

(2016) Kristina M. Cammen et al.   JOURNAL OF HEREDITY

Socio-genetic structure of short-beaked common dolphins in southern Australia

(2016) N. Zanardo et al.   JOURNAL OF ZOOLOGY

Trans-Tasman genetic connectivity in the intertidal air-breathing slug Onchidella nigricans

(2016) RA Cumming et al.   MARINE ECOLOGY PROGRESS SERIES

A decade of seascape genetics: contributions to basic and applied marine connectivity

(2016) KA Selkoe et al.   MARINE ECOLOGY PROGRESS SERIES

Seascape genomics provides evidence for thermal adaptation and current-mediated population structure in American lobster (Homarus americanus )

(2016) Laura Benestan et al.   MOLECULAR ECOLOGY

Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

(2016) Andrew D. Foote et al.   Nature Communications

Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies

(2016) Cynthia Riginos et al.   Current Zoology

Trans-Tasman genetic connectivity in the intertidal air-breathing slug Onchidella nigricans

(2016) RA Cumming et al.   MARINE ECOLOGY PROGRESS SERIES

A decade of seascape genetics: contributions to basic and applied marine connectivity

(2016) KA Selkoe et al.   MARINE ECOLOGY PROGRESS SERIES

Atypical residency of short-beaked common dolphins (Delphinus delphis) to a shallow, urbanized embayment in south-eastern Australia

(2016) Suzanne Mason et al.   Royal Society Open Science

Drivers of Population Structure of the Bottlenose Dolphin (Tursiops truncatus) in the Eastern Mediterranean Sea

(2015) Stefania Gaspari et al.   Evolutionary Biology

On-shelf larval retention limits population connectivity in a coastal broadcast spawner

(2015) PR Teske et al.   MARINE ECOLOGY PROGRESS SERIES

Physical oceanography of the deep seas around New Zealand: a review

(2015) Stephen M Chiswell et al.   NEW ZEALAND JOURNAL OF MARINE AND FRESHWATER RESEARCH

Genomics and the challenging translation into conservation practice

(2015) Aaron B.A. Shafer et al.   TRENDS IN ECOLOGY & EVOLUTION

On-shelf larval retention limits population connectivity in a coastal broadcast spawner

(2015) PR Teske et al.   MARINE ECOLOGY PROGRESS SERIES

Behavioural Effects of Tourism on Oceanic Common Dolphins, Delphinus sp., in New Zealand: The Effects of Markov Analysis Variations and Current Tour Operator Compliance with Regulations

(2015) Anna M. Meissner et al.   PLoS One

Population-level perspectives on global change: genetic and demographic analyses indicate various scales, timing, and causes of scyphozoan jellyfish blooms

(2014) Michael N Dawson et al.   BIOLOGICAL INVASIONS

Habitat-driven population structure of bottlenose dolphins,Tursiops truncatus, in the North-East Atlantic

(2014) Marie Louis et al.   MOLECULAR ECOLOGY

IMOS National Reference Stations: A Continental-Wide Physical, Chemical and Biological Coastal Observing System

(2014) Tim P. Lynch et al.   PLoS One

dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms

(2014) Jonathan B. Puritz et al.   PeerJ

Population genetic structure of common bottlenose dolphins(Tursiops truncatus)in the Adriatic Sea and contiguous regions: implications for international conservation

(2013) Stefania Gaspari et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Behaviour of free-ranging short-beaked common dolphins (Delphinus delphis) in Gulf St Vincent, South Australia

(2013) Nicole E. Filby et al.   AUSTRALIAN JOURNAL OF ZOOLOGY

Multiple management units of short-beaked common dolphins subject to fisheries bycatch off southern and southeastern Australia

(2013) K Bilgmann et al.   MARINE ECOLOGY PROGRESS SERIES

Population genetic structure and taxonomy of the common dolphin (Delphinussp.) at its southernmost range limit: New Zealand waters

(2013) Karen A. Stockin et al.   MARINE MAMMAL SCIENCE

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Common Dolphin (Delphinus delphis) Bycatch in New Zealand Commercial Trawl Fisheries

(2013) Finlay N. Thompson et al.   PLoS One

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Atypical panmixia in a European dolphin species (Delphinus delphis): implications for the evolution of diversity across oceanic boundaries

(2012) A. E. Moura et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Fine-scale genetic population structure in a mobile marine mammal: inshore bottlenose dolphins in Moreton Bay, Australia

(2012) Ina C. Ansmann et al.   MOLECULAR ECOLOGY

Influences of past climatic changes on historical population structure and demography of a cosmopolitan marine predator, the common dolphin (genusDelphinus)

(2012) Ana R. Amaral et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Seascape Genetics of a Globally Distributed, Highly Mobile Marine Mammal: The Short-Beaked Common Dolphin (Genus Delphinus)

(2012) Ana R. Amaral et al.   PLoS One

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

Phylogeography, genetic diversity and population structure of common bottlenose dolphins in the Wider Caribbean inferred from analyses of mitochondrial DNA control region sequences and microsatellite loci: conservation and management implications

(2011) S. Caballero et al.   ANIMAL CONSERVATION

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

Sociogenetic structure, kin associations and bonding in delphinids

(2011) LUCIANA M. MÖLLER   MOLECULAR ECOLOGY

A New Dolphin Species, the Burrunan Dolphin Tursiops australis sp. nov., Endemic to Southern Australian Coastal Waters

(2011) Kate Charlton-Robb et al.   PLoS One

Australia's marine biogeography revisited: Back to the future?

(2010) JONATHAN M. WATERS et al.   AUSTRAL ECOLOGY

Contrasting local retention and cross-shore transports of the East Australian Current and the Leeuwin Current and their relative influences on the life histories of small pelagic fishes

(2010) S.A. Condie et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

The strengthening East Australian Current, its eddies and biological effects — an introduction and overview

(2010) Iain M. Suthers et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Fine-scale genetic structure in short-beaked common dolphins (Delphinus delphis) along the East Australian Current

(2010) Luciana Möller et al.   MARINE BIOLOGY

coancestry: a program for simulating, estimating and analysing relatedness and inbreeding coefficients

(2010) JINLIANG WANG   Molecular Ecology Resources

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Stomach contents of common dolphin (Deiphinussp.) from New Zealand waters

(2010) L. Meynier et al.   NEW ZEALAND JOURNAL OF MARINE AND FRESHWATER RESEARCH

Phylogeography of New Zealand's coastal benthos

(2010) P. M. Ross et al.   NEW ZEALAND JOURNAL OF MARINE AND FRESHWATER RESEARCH

Distribution and Population Demographics of Common Dolphins (Delphinus delphis) in the Gulf St. Vincent, South Australia

(2010) Nicole E. Filby et al.   AQUATIC MAMMALS

Environmental and social influences on the genetic structure of bottlenose dolphins (Tursiops aduncus) in Southeastern Australia

(2009) Joanna Wiszniewski et al.   CONSERVATION GENETICS

Marine biogeographical disjunction in temperate Australia: historical landbridge, contemporary currents, or both?

(2009) Jonathan M. Waters   DIVERSITY AND DISTRIBUTIONS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Population structure of short-beaked common dolphins (Delphinus delphis) in the North Atlantic Ocean as revealed by mitochondrial and nuclear genetic markers

(2009) Mirimin Luca et al.   MARINE BIOLOGY

Common dolphins subject to fisheries impacts in Southern Australia are genetically differentiated: implications for conservation

(2008) K. Bilgmann et al.   ANIMAL CONSERVATION

Measurement, management and mitigation of operational interactions between the South Australian Sardine Fishery and short-beaked common dolphins (Delphinus delphis)

(2008) Derek J. Hamer et al.   BIOLOGICAL CONSERVATION

Conservation genetics of the short-beaked common dolphin (Delphinus delphis) in the Mediterranean Sea and in the eastern North Atlantic Ocean

(2008) Ada Natoli et al.   CONSERVATION GENETICS

Diversity of deep-water cetaceans in relation to temperature: implications for ocean warming

(2008) Hal Whitehead et al.   ECOLOGY LETTERS

Larval fish assemblages along the south-eastern Australian shelf: linking mesoscale non-depth-discriminate structure and water masses

(2008) JOHN P. KEANE et al.   FISHERIES OCEANOGRAPHY

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

A Worldwide Perspective on the Population Structure and Genetic Diversity of Bottlenose Dolphins (Tursiops truncatus) in New Zealand

(2008) Gabriela Tezanos-Pinto et al.   JOURNAL OF HEREDITY

Behavior of free-ranging common dolphins (Delphinussp.) in the Hauraki Gulf, New Zealand

(2008) Karen A. Stockin et al.   MARINE MAMMAL SCIENCE

The Bassian Isthmus and the major ocean currents of southeast Australia influence the phylogeography and population structure of a southern Australian intertidal barnacleCatomerus polymerus(Darwin)

(2008) KATHERINE L. YORK et al.   MOLECULAR ECOLOGY

Factors Affecting the Occurrence and Demographics of Common Dolphins (Delphinus sp.) in the Hauraki Gulf, New Zealand

(2008) Karen A. Stockin et al.   AQUATIC MAMMALS