A novel metabarcoding primer pair for environmental DNA analysis of Cephalopoda (Mollusca) targeting the nuclear 18S rRNA region

Meiofaunal diversity at a seamount in the pacific ocean: A comprehensive study using environmental DNA and RNA

(2020) Tomo Kitahashi et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape

(2020) Bryan N. Nguyen et al.   Scientific Reports

Phylogenetic relationships and cryptic species in the genus Sthenoteuthis (Cephalopoda: Ommastrephidae) in the South China Sea

(2020) Lei Xu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Exploring a legendary giant squid: an environmental DNA approach

(2020) Toshifumi Wada et al.   MARINE BIOLOGY

From Sea Surface to Seafloor: A Benthic Allochthonous eDNA Survey for the Abyssal Ocean

(2020) Olivier Laroche et al.   Frontiers in Marine Science

Multi-marker DNA metabarcoding reflects tardigrade diversity in different habitats

(2020) Lasse Topstad et al.   GENOME

The ecological role of cephalopods and their representation in ecosystem models

(2019) Thibaut de la Chesnais et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Development of the cephalopod-specific universal primer set and its application for the metabarcoding analysis of planktonic cephalopods in Korean waters

(2019) Eun-Bi Kim et al.   PeerJ

Environmental DNA size sorting and degradation experiment indicates the state of Daphnia magna mitochondrial and nuclear eDNA is subcellular

(2019) Rashnat Moushomi et al.   Scientific Reports

Combined use of eDNA metabarcoding and video surveillance for the assessment of fish biodiversity

(2018) Michal Stat et al.   CONSERVATION BIOLOGY

Does Size Matter? An Experimental Evaluation of the Relative Abundance and Decay Rates of Aquatic Environmental DNA

(2018) Jonas Bylemans et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Evaluation of marine zooplankton community structure through environmental DNA metabarcoding

(2018) Anni Djurhuus et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

A review on the biodiversity, distribution and trophic role of cephalopods in the Arctic and Antarctic marine ecosystems under a changing ocean

(2018) José C. Xavier et al.   MARINE BIOLOGY

Supervised machine learning outperforms taxonomy-based environmental DNA metabarcoding applied to biomonitoring

(2018) Tristan Cordier et al.   Molecular Ecology Resources

Uses and Misuses of Environmental DNA in Biodiversity Science and Conservation

(2018) Melania E. Cristescu et al.   Annual Review of Ecology Evolution and Systematics

Multi-marker metabarcoding approach to study mesozooplankton at basin scale

(2018) Sergio Stefanni et al.   Scientific Reports

Metabarcoding of marine environmental DNA based on mitochondrial and nuclear genes

(2018) Babett Günther et al.   Scientific Reports

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Seawater environmental DNA reflects seasonality of a coastal fish community

(2017) Eva Egelyng Sigsgaard et al.   MARINE BIOLOGY

Using seabirds to map the distribution of elusive pelagic cephalopod species

(2017) JM Pereira et al.   MARINE ECOLOGY PROGRESS SERIES

Bathyal feasting: post-spawning squid as a source of carbon for deep-sea benthic communities

(2017) H. J. T. Hoving et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment

(2017) Michael Stat et al.   Scientific Reports

Using seabirds to map the distribution of elusive pelagic cephalopod species

(2017) JM Pereira et al.   MARINE ECOLOGY PROGRESS SERIES

Cephalopods as Predators: A Short Journey among Behavioral Flexibilities, Adaptions, and Feeding Habits

(2017) Roger Villanueva et al.   Frontiers in Physiology

Cephalopod biodiversity in the vicinity of Bear Seamount, western North Atlantic based on exploratory trawling from 2000 to 2014

(2017) Elizabeth K. Shea et al.   Marine Biodiversity

Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding

(2017) Elizabeth A. Andruszkiewicz et al.   PLoS One

DNA in a bottle—Rapid metabarcoding survey for early alerts of invasive species in ports

(2017) Yaisel J. Borrell et al.   PLoS One

The deep-water squid Octopoteuthis sicula Rüppell, 1844 (Cephalopoda: Octopoteuthidae) as the single species of the genus occurring in the Mediterranean Sea

(2016) Patrizia Jereb et al.   MARINE BIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

Toward accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods

(2015) Jullien M. Flynn et al.   Ecology and Evolution

AliView: a fast and lightweight alignment viewer and editor for large datasets

(2014) Anders Larsson   BIOINFORMATICS

PCR-based techniques to determine diet of the Australian sea lion (Neophoca cinerea ): a comparison with morphological analysis

(2014) Kristian J. Peters et al.   Marine Ecology-An Evolutionary Perspective

Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers

(2014) Kenan Hadziavdic et al.   PLoS One

Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

(2013) J. Geller et al.   Molecular Ecology Resources

Illumina metabarcoding of a soil fungal community

(2013) Philipp-André Schmidt et al.   SOIL BIOLOGY & BIOCHEMISTRY

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

(2012) Jian Ye et al.   BMC BIOINFORMATICS

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

(2011) Tiayyba Riaz et al.   NUCLEIC ACIDS RESEARCH

An In silico approach for the evaluation of DNA barcodes

(2010) Gentile Ficetola et al.   BMC GENOMICS

Cryptic speciation and the circumpolarity debate: A case study on endemic Southern Ocean octopuses using the COI barcode of life

(2010) A. Louise Allcock et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

The trophic role of the squid Loligo plei as a keystone species in the South Brazil Bight ecosystem

(2010) M. A. Gasalla et al.   ICES JOURNAL OF MARINE SCIENCE

Molecular inference of phylogenetic relationships among Decapodiformes (Mollusca: Cephalopoda) with special focus on the squid Order Oegopsida

(2010) Annie R. Lindgren   MOLECULAR PHYLOGENETICS AND EVOLUTION

Cephalopods of the northern Mid-Atlantic Ridge

(2009) Michael Vecchione et al.   Marine Biology Research

New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: thetrnL approach

(2009) ALICE VALENTINI et al.   Molecular Ecology Resources

Species detection using environmental DNA from water samples

(2008) G. F. Ficetola et al.   Biology Letters

A universal DNA mini-barcode for biodiversity analysis

(2008) Isabelle Meusnier et al.   BMC GENOMICS