Functional metagenomics reveals differential chitin degradation and utilization features across free-living and host-associated marine microbiomes

Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria

(2019) Elham Karimi et al.   Scientific Reports

The microbial succession of anaerobic chitin degradation in freshwater sediments

(2019) Susanne Wörner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ecological Functions of Agricultural Soil Bacteria and Microeukaryotes in Chitin Degradation: A Case Study

(2019) Adam S. Wieczorek et al.   Frontiers in Microbiology

The Classification and Evolution of Bacterial Cross-Feeding

(2019) Nick W. Smith et al.   Frontiers in Ecology and Evolution

Comparative genomics reveals complex natural product biosynthesis capacities and carbon metabolism across host‐associated and free‐living Aquimarina ( Bacteroidetes, Flavobacteriaceae ) species

(2019) Sandra G. Silva et al.   ENVIRONMENTAL MICROBIOLOGY

Detecting signatures of a sponge-associated lifestyle in bacterial genomes

(2018) Cristina Díez-Vives et al.   Environmental Microbiology Reports

The sponge holobiont in a changing ocean: from microbes to ecosystems

(2018) L. Pita et al.   Microbiome

Host-microbe interactions in octocoral holobionts - recent advances and perspectives

(2018) Jeroen A. J. M. van de Water et al.   Microbiome

Bioactive Secondary Metabolites from Octocoral-Associated Microbes—New Chances for Blue Growth

(2018) Inês Raimundo et al.   Marine Drugs

Chitin and chitinase: Role in pathogenicity, allergenicity and health

(2017) Seema Patel et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Comparative Metagenomics Reveals the Distinctive Adaptive Features of the Spongia officinalis Endosymbiotic Consortium

(2017) Elham Karimi et al.   Frontiers in Microbiology

The presence of genes encoding enzymes that digest carbohydrates in coral genomes and analysis of their activities

(2017) Yuki Yoshioka et al.   PeerJ

Biological Potential of Chitinolytic Marine Bacteria

(2016) Sara Paulsen et al.   Marine Drugs

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

Chitosan as a starting material for wound healing applications

(2015) V. Patrulea et al.   EUROPEAN JOURNAL OF PHARMACEUTICS AND BIOPHARMACEUTICS

EBI metagenomics in 2016 - an expanding and evolving resource for the analysis and archiving of metagenomic data

(2015) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

Poriferan Chitin as a Versatile Template for Extreme Biomimetics

(2015) Marcin Wysokowski et al.   Polymers

Microbial Communities and Bioactive Compounds in Marine Sponges of the Family Irciniidae—A Review

(2014) Cristiane Hardoim et al.   Marine Drugs

Vibrio diversity and dynamics in the Monterey Bay upwelling region

(2014) Sarah Mansergh et al.   Frontiers in Microbiology

Effects of sample handling and cultivation bias on the specificity of bacterial communities in keratose marine sponges

(2014) Cristiane C. P. Hardoim et al.   Frontiers in Microbiology

Molecular richness and biotechnological potential of bacteria cultured from Irciniidae sponges in the north-east Atlantic

(2013) Ana I.S. Esteves et al.   FEMS MICROBIOLOGY ECOLOGY

Ardenticatena maritima gen. nov., sp. nov., a ferric iron- and nitrate-reducing bacterium of the phylum 'Chloroflexi' isolated from an iron-rich coastal hydrothermal field, and description of Ardenticatenia classis nov.

(2013) S. Kawaichi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Bacterial chitin degradation—mechanisms and ecophysiological strategies

(2013) Sara Beier et al.   Frontiers in Microbiology

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools

(2012) Andreas Wilke et al.   BMC BIOINFORMATICS

WebMGA: a customizable web server for fast metagenomic sequence analysis

(2011) Sitao Wu et al.   BMC GENOMICS

Marine sponges and their microbial symbionts: love and other relationships

(2011) Nicole S. Webster et al.   ENVIRONMENTAL MICROBIOLOGY

The Importance of Chitin in the Marine Environment

(2011) Claudiana P. Souza et al.   MARINE BIOTECHNOLOGY

Global Phylogeography of Chitinase Genes in Aquatic Metagenomes

(2010) Sara Beier et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

Particulate organic matter as a food source for a coral reef sponge

(2009) E. Hadas et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Chitin oligosaccharides inhibit oxidative stress in live cells

(2008) Dai-Nghiep Ngo et al.   CARBOHYDRATE POLYMERS

Evolution of Family 18 Glycoside Hydrolases: Diversity, Domain Structures and Phylogenetic Relationships

(2008) Magnus Karlsson et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Characterization of Antifungal Chitinase from Marine Streptomyces sp. DA11 Associated with South China Sea Sponge Craniella Australiensis

(2008) Yue Han et al.   MARINE BIOTECHNOLOGY