Succession of the composition and co-occurrence networks of rhizosphere microbiota is linked to Cd/Zn hyperaccumulation

Successive phytoextraction alters ammonia oxidation and associated microbial communities in heavy metal contaminated agricultural soils

(2019) Jipeng Luo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Toxicity drives facilitation between 4 bacterial species

(2019) Philippe Piccardi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Competitive Traits Are More Important than Stress-Tolerance Traits in a Cadmium-Contaminated Rhizosphere: A Role for Trait Theory in Microbial Ecology

(2018) Jennifer L. Wood et al.   Frontiers in Microbiology

Microbial interactions within the plant holobiont

(2018) M. Amine Hassani et al.   Microbiome

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Cadmium Exposure-Sedum alfredii Planting Interactions Shape the Bacterial Community in the Hyperaccumulator Plant Rhizosphere

(2018) Dandi Hou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structural development and assembly patterns of the root-associated microbiomes during phytoremediation

(2018) Yanmei Chen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Unique Rhizosphere Micro-characteristics Facilitate Phytoextraction of Multiple Metals in Soil by the Hyperaccumulating Plant Sedum alfredii

(2017) Dandi Hou et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Modulation of the efficiency of trace metal phytoremediation by Sedum plumbizincicola by microbial community structure and function

(2017) Jinyu Hou et al.   PLANT AND SOIL

Giant reed growth and effects on soil biological fertility in assisted phytoremediation of an industrial polluted soil

(2017) N. Fiorentino et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Microbial interactions and community assembly at microscales

(2016) Otto X Cordero et al.   CURRENT OPINION IN MICROBIOLOGY

Beneficial role of bacterial endophytes in heavy metal phytoremediation

(2016) Ying Ma et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Mechanisms of plant and microbial adaptation to heavy metals in plant–microbial systems

(2016) V. N. Pishchik et al.   MICROBIOLOGY

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Error filtering, pair assembly and error correction for next-generation sequencing reads

(2015) Robert C. Edgar et al.   BIOINFORMATICS

Pyrosequencing-Based Seasonal Observation of Prokaryotic Diversity in Pneumatophore-Associated Soil of Avicennia marina

(2015) Dinesh Sanka Loganathachetti et al.   CURRENT MICROBIOLOGY

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

A widespread plant-fungal-bacterial symbiosis promotes plant biodiversity, plant nutrition and seedling recruitment

(2015) Marcel GA van der Heijden et al.   ISME Journal

Dispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology

(2015) James I. Prosser   NATURE REVIEWS MICROBIOLOGY

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The extent of functional redundancy changes as species’ roles shift in different environments

(2015) Ingo Fetzer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons

(2015) Shengjing Shi et al.   mBio

Improvement of cadmium uptake and accumulation in Sedum alfredii by endophytic bacteria Sphingomonas SaMR12 : Effects on plant growth and root exudates

(2014) Bao Chen et al.   CHEMOSPHERE

Taxonomical and functional microbial community selection in soybean rhizosphere

(2014) Lucas W Mendes et al.   ISME Journal

Dynamics in microbial communities: unraveling mechanisms to identify principles

(2014) Allan Konopka et al.   ISME Journal

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Heavy metal pollution decreases microbial abundance, diversity and activity within particle-size fractions of a paddy soil

(2013) Junhui Chen et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial expression profiles in the rhizosphere of willows depend on soil contamination

(2013) Etienne Yergeau et al.   ISME Journal

Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny

(2013) Terrence H Bell et al.   ISME Journal

Diffuse symbioses: roles of plant-plant, plant-microbe and microbe-microbe interactions in structuring the soil microbiome

(2013) Matthew G. Bakker et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Denaturing Gradient Gel Electrophoresis and Barcoded Pyrosequencing Reveal Unprecedented Archaeal Diversity in Mangrove Sediment and Rhizosphere Samples

(2012) Ana C. C. Pires et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Diversity and abundance of ammonia-oxidizing archaea and bacteria in polluted mangrove sediment

(2011) Huiluo Cao et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Soil beneficial bacteria and their role in plant growth promotion: a review

(2010) Rifat Hayat et al.   ANNALS OF MICROBIOLOGY

Impact of Metal Pollution and Thlaspi caerulescens Growth on Soil Microbial Communities

(2010) L. Epelde et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rhizosphere characteristics of zinc hyperaccumulator Sedum alfredii involved in zinc accumulation

(2010) Tingqiang Li et al.   JOURNAL OF HAZARDOUS MATERIALS

Functional Molecular Ecological Networks

(2010) J. Zhou et al.   mBio

Resilience of the rhizosphere Pseudomonas and ammonia-oxidizing bacterial populations during phytoextraction of heavy metal polluted soil with poplar

(2008) Beat Frey et al.   ENVIRONMENTAL MICROBIOLOGY

Selective progressive response of soil microbial community to wild oat roots

(2008) Kristen M DeAngelis et al.   ISME Journal

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

Molecular eco-systems biology: towards an understanding of community function

(2008) Jeroen Raes et al.   NATURE REVIEWS MICROBIOLOGY