Climate-driven flyway changes and memory-based long-distance migration

High-resolution terrestrial climate, bioclimate and vegetation for the last 120,000 years

(2020) Robert M. Beyer et al.   Scientific Data

Northern Hemisphere biome changes (>30°N) since 40 cal ka BP and their driving factors inferred from model-data comparisons

(2019) Xianyong Cao et al.   QUATERNARY SCIENCE REVIEWS

Status and trends of circumpolar peregrine falcon and gyrfalcon populations

(2019) Alastair Franke et al.   AMBIO

Demography and rapid local adaptation shape Creole cattle genome diversity in the tropics

(2018) Daniel Pitt et al.   Evolutionary Applications

Genomic signals of selection predict climate-driven population declines in a migratory bird

(2018) Rachael A. Bay et al.   SCIENCE

Long-distance migratory birds threatened by multiple independent risks from global change

(2018) Damaris Zurell et al.   Nature Climate Change

Potential for an Arctic-breeding migratory bird to adjust spring migration phenology to Arctic amplification

(2017) Thomas K. Lameris et al.   GLOBAL CHANGE BIOLOGY

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

(2017) Stephen E. Fick et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Population transcriptomes reveal synergistic responses of DNA polymorphism and RNA expression to extreme environments on the Qinghai-Tibetan Plateau in a predatory bird

(2017) Shengkai Pan et al.   MOLECULAR ECOLOGY

The Genetics of Seasonal Migration and Plumage Color

(2016) Kira E. Delmore et al.   CURRENT BIOLOGY

Upgrading short-read animal genome assemblies to chromosome level using comparative genomics and a universal probe set

(2016) Joana Damas et al.   GENOME RESEARCH

Rapid climate-driven loss of breeding habitat for Arctic migratory birds

(2016) Hannah S. Wauchope et al.   GLOBAL CHANGE BIOLOGY

Controlling false discoveries in genome scans for selection

(2016) Olivier François et al.   MOLECULAR ECOLOGY

Haplotyping germline and cancer genomes with high-throughput linked-read sequencing

(2016) Grace X Y Zheng et al.   NATURE BIOTECHNOLOGY

Robust and scalable inference of population history from hundreds of unphased whole genomes

(2016) Jonathan Terhorst et al.   NATURE GENETICS

Individual repeatability in timing and spatial flexibility of migration routes of trans-Saharan migratory raptors

(2016) Pascual López-López et al.   Current Zoology

scrm: efficiently simulating long sequences using the approximated coalescent with recombination

(2015) Paul R. Staab et al.   BIOINFORMATICS

Reliable ABC model choice via random forests

(2015) Pierre Pudlo et al.   BIOINFORMATICS

The cost of migration: spoonbills suffer higher mortality during trans-Saharan spring migrations only

(2015) T. Lok et al.   Biology Letters

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data

(2015) Mario Barbato et al.   Frontiers in Genetics

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex

(2014) Y. Zhang et al.   JOURNAL OF NEUROSCIENCE

selscan: An Efficient Multithreaded Program to Perform EHH-Based Scans for Positive Selection

(2014) Z. A. Szpiech et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations

(2013) M. I. Fariello et al.   GENETICS

Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle

(2013) Xiangjiang Zhan et al.   NATURE GENETICS

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

TFBSshape: a motif database for DNA shape features of transcription factor binding sites

(2013) Lin Yang et al.   NUCLEIC ACIDS RESEARCH

Social Learning of Migratory Performance

(2013) T. Mueller et al.   SCIENCE

The effect of close relatives on unsupervised Bayesian clustering algorithms in population genetic structure analysis

(2012) SILVIA T. RODRÍGUEZ-RAMILO et al.   Molecular Ecology Resources

Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation

(2012) Shancen Zhao et al.   NATURE GENETICS

Moderating Argos location errors in animal tracking data

(2012) David C. Douglas et al.   Methods in Ecology and Evolution

abc: an R package for approximate Bayesian computation (ABC)

(2012) Katalin Csilléry et al.   Methods in Ecology and Evolution

Absence of Ca2+-stimulated adenylyl cyclases leads to reduced synaptic plasticity and impaired experience-dependent fear memory

(2012) L Wieczorek et al.   Translational Psychiatry

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended

(2010) Maxime Bonhomme et al.   GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

The Last Glacial Maximum

(2009) P. U. Clark et al.   SCIENCE

Ca-Stimulated Type 8 Adenylyl Cyclase Is Required for Rapid Acquisition of Novel Spatial Information and for Working/Episodic-Like Memory

(2008) M. Zhang et al.   JOURNAL OF NEUROSCIENCE

A quantitative measure of migratory connectivity

(2008) Roberto Ambrosini et al.   JOURNAL OF THEORETICAL BIOLOGY

Going, Going, Gone: Is Animal Migration Disappearing

(2008) David S Wilcove et al.   PLOS BIOLOGY