Population transcriptomes reveal synergistic responses of DNA polymorphism and RNA expression to extreme environments on the Qinghai-Tibetan Plateau in a predatory bird

Characteristics of home range areas used by Saker Falcons (Falco cherrug) wintering on the Qinghai-Tibetan Plateau

(2016) ANDREW DIXON et al.   BIRD CONSERVATION INTERNATIONAL

Controlling false discoveries in genome scans for selection

(2016) Olivier François et al.   MOLECULAR ECOLOGY

minotaur: A platform for the analysis and visualization of multivariate results from genome scans with R Shiny

(2016) Robert Verity et al.   Molecular Ecology Resources

pcadapt: anRpackage to perform genome scans for selection based on principal component analysis

(2016) Keurcien Luu et al.   Molecular Ecology Resources

Hsp90aa1: a novel target gene of miR-1 in cardiac ischemia/reperfusion injury

(2016) Wen Si Zhu et al.   Scientific Reports

Comparative transcriptomic analysis revealed adaptation mechanism of Phrynocephalus erythrurus, the highest altitude Lizard living in the Qinghai-Tibet Plateau

(2015) Yongzhi Yang et al.   BMC EVOLUTIONARY BIOLOGY

Detecting Genomic Signatures of Natural Selection with Principal Component Analysis: Application to the 1000 Genomes Data

(2015) Nicolas Duforet-Frebourg et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic Analyses Reveal Potential Independent Adaptation to High Altitude in Tibetan Chickens

(2015) Ming-Shan Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phenotypic plasticity in gene expression contributes to divergence of locally adapted populations ofFundulus heteroclitus

(2015) David I. Dayan et al.   MOLECULAR ECOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

The role of the uplift of the Qinghai-Tibetan Plateau for the evolution of Tibetan biotas

(2014) Adrien Favre et al.   BIOLOGICAL REVIEWS

Population history and genomic signatures for high-altitude adaptation in Tibetan pigs

(2014) Huashui Ai et al.   BMC GENOMICS

Genetic Convergence in the Adaptation of Dogs and Humans to the High-Altitude Environment of the Tibetan Plateau

(2014) Guo-Dong Wang et al.   Genome Biology and Evolution

Exonic versus intronic SNPs: contrasting roles in revealing the population genetic differentiation of a widespread bird species

(2014) X Zhan et al.   HEREDITY

Robustly detecting differential expression in RNA sequencing data using observation weights

(2014) Xiaobei Zhou et al.   NUCLEIC ACIDS RESEARCH

Hypoxia Adaptations in the Grey Wolf (Canis lupus chanco) from Qinghai-Tibet Plateau

(2014) Wenping Zhang et al.   PLoS Genetics

The problem of raptor electrocution in Asia: case studies from Mongolia and China

(2013) ANDREW DIXON et al.   BIRD CONSERVATION INTERNATIONAL

Transcriptional hierarchies regulating early blood cell development

(2013) Victoria Moignard et al.   BLOOD CELLS MOLECULES AND DISEASES

Post-translational regulation of mTOR complex 1 in hypoxia and reoxygenation

(2013) Chia Yee Tan et al.   CELLULAR SIGNALLING

Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations

(2013) M. I. Fariello et al.   GENETICS

Tibetans living at sea level have a hyporesponsive hypoxia-inducible factor system and blunted physiological responses to hypoxia

(2013) Nayia Petousi et al.   JOURNAL OF APPLIED PHYSIOLOGY

Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle

(2013) Xiangjiang Zhan et al.   NATURE GENETICS

JMJD5 regulates PKM2 nuclear translocation and reprograms HIF-1 -mediated glucose metabolism

(2013) H.-J. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ground tit genome reveals avian adaptation to living at high altitudes in the Tibetan plateau

(2013) Yanhua Qu et al.   Nature Communications

Draft genome sequence of the Tibetan antelope

(2013) Ri-Li Ge et al.   Nature Communications

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Pleiotropic Action of Renal Cell Carcinoma-Dysregulated miRNAs on Hypoxia-Related Signaling Pathways

(2012) Zsuzsanna Lichner et al.   AMERICAN JOURNAL OF PATHOLOGY

The yak genome and adaptation to life at high altitude

(2012) Qiang Qiu et al.   NATURE GENETICS

Transcriptome and Network Changes in Climbers at Extreme Altitudes

(2012) Fang Chen et al.   PLoS One

Environmental Temperature Affects Prevalence of Blood Parasites of Birds on an Elevation Gradient: Implications for Disease in a Warming Climate

(2012) Itzel Zamora-Vilchis et al.   PLoS One

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

HIF-1α and HSP90: Target molecules selected from a tumorigenic papillary thyroid carcinoma cell line

(2011) Ji-Hun Mo et al.   CANCER SCIENCE

Genomic insights into adaptation to high-altitude environments

(2011) Z A Cheviron et al.   HEREDITY

Interplay between thermal and immune ecology: Effect of environmental temperature on insect immune response and energetic costs after an immune challenge

(2011) Tamara P. Catalán et al.   JOURNAL OF INSECT PHYSIOLOGY

Hypoxia: a double-edged sword of immunity

(2011) Antonio Sica et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq data

(2011) Jun Li et al.   STATISTICAL METHODS IN MEDICAL RESEARCH

HSP70 protects intestinal epithelial cells from hypoxia/reoxygenation injury via a mechanism that involves the mitochondrial pathways

(2010) Zhi-Qiang Yuan et al.   EUROPEAN JOURNAL OF PHARMACOLOGY

Mitochondrial chaperone tumour necrosis factor receptor-associated protein 1 protects cardiomyocytes from hypoxic injury by regulating mitochondrial permeability transition pore opening

(2010) Fei Xiang et al.   FEBS Journal

Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended

(2010) Maxime Bonhomme et al.   GENETICS

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

(2010) X. Yi et al.   SCIENCE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

c-Jun Protects Hypoxia-Inducible Factor-1  from Degradation via Its Oxygen-Dependent Degradation Domain in a Nontranscriptional Manner

(2009) B. Yu et al.   CANCER RESEARCH

Recent land cover changes on the Tibetan Plateau: a review

(2009) Xuefeng Cui et al.   CLIMATIC CHANGE

SNP detection for massively parallel whole-genome resequencing

(2009) R. Li et al.   GENOME RESEARCH

Regulation of LMO2 mRNA and protein expression in erythroid differentiation

(2009) S. J. Brandt et al.   HAEMATOLOGICA

Burrow use by Tibetan Ground Tits Pseudopodoces humilis: coping with life at high altitudes

(2009) DIANHUA KE et al.   IBIS

Structure and Evolution of a New Avian MHC Class II B Gene in a Sub-Antarctic Seabird, the Thin-Billed Prion (Procellariiformes: Pachyptila belcheri)

(2009) Mónica C. Silva et al.   JOURNAL OF MOLECULAR EVOLUTION

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

Transcriptomic variation and plasticity in rufous-collared sparrows (Zonotrichia capensis) along an altitudinal gradient

(2008) ZACHARY A. CHEVIRON et al.   MOLECULAR ECOLOGY