Screening of Yeast Display Libraries of Enzymatically Treated Peptides to Discover Macrocyclic Peptide Ligands

Isolation of Chemically Cyclized Peptide Binders Using Yeast Surface Display

(2020) Kaitlyn Bacon et al.   ACS Combinatorial Science

Screening Yeast Display Libraries against Magnetized Yeast Cell Targets Enables Efficient Isolation of Membrane Protein Binders

(2019) Kaitlyn Bacon et al.   ACS Combinatorial Science

Computational design of the helical hairpin structure of membrane-active antibacterial peptides based on RSV glycoprotein epitope scaffold

(2018) Jinhua Fu et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Development and Application of Yeast and Phage Display of Diverse Lanthipeptides

(2018) Kenton J. Hetrick et al.   ACS Central Science

Directed Evolution of a Bond-Forming Enzyme: Ultrahigh-Throughput Screening of Microbial Transglutaminase Using Yeast Surface Display

(2018) Lukas Deweid et al.   CHEMISTRY-A EUROPEAN JOURNAL

Phage display and selection of lanthipeptides on the carboxy-terminus of the gene-3 minor coat protein

(2017) Johannes H. Urban et al.   Nature Communications

Peptide-based inhibitors of protein–protein interactions

(2016) Paulina Wójcik et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes

(2016) G.C.P. van Zundert et al.   JOURNAL OF MOLECULAR BIOLOGY

The MM/PBSA and MM/GBSA methods to estimate ligand-binding affinities

(2015) Samuel Genheden et al.   Expert Opinion on Drug Discovery

OPLS3: A Force Field Providing Broad Coverage of Drug-like Small Molecules and Proteins

(2015) Edward Harder et al.   Journal of Chemical Theory and Computation

Butelase 1: A Versatile Ligase for Peptide and Protein Macrocyclization

(2015) Giang K. T. Nguyen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Tetrahydropyranyl, a Nonaromatic Acid-Labile Cys Protecting Group for Fmoc Peptide Chemistry

(2015) Iván Ramos-Tomillero et al.   ORGANIC LETTERS

Toward structure prediction of cyclic peptides

(2015) Hongtao Yu et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

WW Domains of the Yes-Kinase-Associated-Protein (YAP) Transcriptional Regulator Behave as Independent Units with Different Binding Preferences for PPxY Motif-Containing Ligands

(2015) Manuel Iglesias-Bexiga et al.   PLoS One

A Tandem In Situ Peptide Cyclization through Trifluoroacetic Acid Cleavage

(2014) Koushik Chandra et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Small-Molecule Inhibitors of Protein-Protein Interactions: Progressing toward the Reality

(2014) Michelle R. Arkin et al.   CHEMISTRY & BIOLOGY

The Biology of YAP/TAZ: Hippo Signaling and Beyond

(2014) Stefano Piccolo et al.   PHYSIOLOGICAL REVIEWS

Reversible Cyclic Peptide Libraries for the Discovery of Affinity Ligands

(2013) Stefano Menegatti et al.   ANALYTICAL CHEMISTRY

Ribosomally Synthesized and Post-Translationally Modified Peptide Natural Products: New Insights into the Role of Leader and Core Peptides during Biosynthesis

(2013) Xiao Yang et al.   CHEMISTRY-A EUROPEAN JOURNAL

High-affinity Cyclic Peptide Matriptase Inhibitors

(2013) Pedro Quimbar et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments

(2013) G. Madhavi Sastry et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

A Cyclic Peptide Inhibitor of HIF-1 Heterodimerization That Inhibits Hypoxia Signaling in Cancer Cells

(2013) Elena Miranda et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Engineering of TEV protease variants by yeast ER sequestration screening (YESS) of combinatorial libraries

(2013) L. Yi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Flexible or fixed: a comparative review of linear and cyclic cancer-targeting peptides

(2012) Áron Roxin et al.   Future Medicinal Chemistry

Protein selection using yeast surface display

(2012) Nimish Gera et al.   METHODS

The radical SAM enzyme AlbA catalyzes thioether bond formation in subtilosin A

(2012) Leif Flühe et al.   Nature Chemical Biology

Structural Basis for the Versatile Interactions of Smad7 with Regulator WW Domains in TGF-β Pathways

(2012) Eric Aragón et al.   STRUCTURE

Avogadro: an advanced semantic chemical editor, visualization, and analysis platform

(2012) Marcus D Hanwell et al.   Journal of Cheminformatics

Bacterial Display and Screening of Posttranslationally Thioether-Stabilized Peptides

(2011) Tjibbe Bosma et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Highly Stable Binding Proteins Derived from the Hyperthermophilic Sso7d Scaffold

(2011) Nimish Gera et al.   JOURNAL OF MOLECULAR BIOLOGY

Enzymatic Cyclisation of Peptides with a Transglutaminase

(2010) Jeremy Touati et al.   CHEMBIOCHEM

Assessing the Performance of the MM/PBSA and MM/GBSA Methods. 1. The Accuracy of Binding Free Energy Calculations Based on Molecular Dynamics Simulations

(2010) Tingjun Hou et al.   Journal of Chemical Information and Modeling

Prediction of Absolute Solvation Free Energies using Molecular Dynamics Free Energy Perturbation and the OPLS Force Field

(2010) Devleena Shivakumar et al.   Journal of Chemical Theory and Computation

The HADDOCK web server for data-driven biomolecular docking

(2010) Sjoerd J de Vries et al.   Nature Protocols

Hydrocarbon double-stapling remedies the proteolytic instability of a lengthy peptide therapeutic

(2010) G. H. Bird et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An improved yeast transformation method for the generation of very large human antibody libraries

(2010) Lorenzo Benatuil et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Sortase-Mediated Ligation: A Gift from Gram-Positive Bacteria to Protein Engineering

(2009) Shinya Tsukiji et al.   CHEMBIOCHEM

Amino Acid-Protecting Groups

(2009) Albert Isidro-Llobet et al.   CHEMICAL REVIEWS

Long-timescale molecular dynamics simulations of protein structure and function

(2009) John L Klepeis et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

A Straight Path to Circular Proteins

(2009) John M. Antos et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation