Fixation of allelic gene expression landscapes and expression bias pattern shape the transcriptome of the clonal Amazon molly

Familiarity increases aggressiveness among clonal fish

(2019) Carolina Doran et al.   ANIMAL BEHAVIOUR

Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly

(2018) Wesley C. Warren et al.   Nature Ecology & Evolution

Behavioural individuality in clonal fish arises despite near-identical rearing conditions

(2017) David Bierbach et al.   Nature Communications

The making of winners (and losers): how early dominance interactions determine adult social structure in a clonal fish

(2016) Kate L. Laskowski et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Molecular genetic response of Xiphophorus maculatus – X . couchianus interspecies hybrid skin to UVB exposure

(2015) Yuan Lu et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

The ecology of sexual reproduction

(2014) C. M. Lively et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Alternative strategies for development of a reference transcriptome for quantification of allele specific expression in organisms having sparse genomic resources

(2012) Yingjia Shen et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Monophyletic origin of multiple clonal lineages in an asexual fish (Poecilia formosa)

(2010) MATTHIAS STÖCK et al.   MOLECULAR ECOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing

(2009) Graham A. Heap et al.   HUMAN MOLECULAR GENETICS

Accelerated Mutation Accumulation in Asexual Lineages of a Freshwater Snail

(2009) M. Neiman et al.   MOLECULAR BIOLOGY AND EVOLUTION

Statistical methods for analysis of high-throughput RNA interference screens

(2009) Amanda Birmingham et al.   NATURE METHODS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Quantifying the threat of extinction from Muller's ratchet in the diploid Amazon molly (Poecilia formosa)

(2008) Laurence Loewe et al.   BMC EVOLUTIONARY BIOLOGY

Diploid Amazon mollies (Poecilia formosa) show a higher fitness than triploids in clonal competition experiments

(2008) D. K. Lamatsch et al.   EVOLUTIONARY ECOLOGY

The origin and evolution of a unisexual hybrid: Poecilia formosa

(2008) K.P Lampert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES