Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly

Genetic Exchange among Bdelloid Rotifers Is More Likely Due to Horizontal Gene Transfer Than to Meiotic Sex

(2016) Nicolas Debortoli et al.   CURRENT BIOLOGY

Sex speeds adaptation by altering the dynamics of molecular evolution

(2016) Michael J. McDonald et al.   NATURE

No Accumulation of Transposable Elements in Asexual Arthropods

(2015) Jens Bast et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

Evolutionary perspectives on clonal reproduction in vertebrate animals

(2015) John C. Avise   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sex is a ubiquitous, ancient, and inherent attribute of eukaryotic life

(2015) Dave Speijer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Non-crossover gene conversions show strong GC bias and unexpected clustering in humans

(2015) Amy L Williams et al.   eLife

SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

(2014) Marten Boetzer et al.   BMC BIOINFORMATICS

Parallel selection on gene copy number variations through evolution of three-spined stickleback genomes

(2014) Shotaro Hirase et al.   BMC GENOMICS

The ecology of sexual reproduction

(2014) C. M. Lively et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

(2013) Jean-François Flot et al.   NATURE

The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits

(2013) Manfred Schartl et al.   NATURE GENETICS

Ensembl 2014

(2013) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Population-genomic insights into the evolutionary origin and fate of obligately asexual Daphnia pulex

(2013) A. E. Tucker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population genomics reveals a possible history of backcrossing and recombination in the gynogenetic fishPoecilia formosa

(2013) Laura Alberici da Barbiano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

REAPR: a universal tool for genome assembly evaluation

(2013) Martin Hunt et al.   GENOME BIOLOGY

A Whole-Chromosome Analysis of Meiotic Recombination in Drosophila melanogaster

(2012) Danny E. Miller et al.   G3-Genes Genomes Genetics

Meiosis I chromosome segregation is established through regulation of microtubule–kinetochore interactions

(2012) Matthew P Miller et al.   eLife

The Genetics of Hybrid Incompatibilities

(2011) Shamoni Maheshwari et al.   Annual Review of Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

High Rate of Large-Scale Hemizygous Deletions in Asexually Propagating Daphnia: Implications for the Evolution of Sex

(2010) S. Xu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Monophyletic origin of multiple clonal lineages in an asexual fish (Poecilia formosa)

(2010) MATTHIAS STÖCK et al.   MOLECULAR ECOLOGY

mlRho - a program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes

(2010) BERNHARD HAUBOLD et al.   MOLECULAR ECOLOGY

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Sex in unisexual salamanders: discovery of a new sperm donor with ancient affinities

(2009) J P Bogart et al.   HEREDITY

Major histocompatibility complex variability in the clonal Amazon molly,Poecilia formosa: is copy number less important than genotype?

(2009) K. P. LAMPERT et al.   MOLECULAR ECOLOGY

Signs of sex: what we know and how we know it

(2009) Andrew M. Schurko et al.   TRENDS IN ECOLOGY & EVOLUTION

Quantifying the threat of extinction from Muller's ratchet in the diploid Amazon molly (Poecilia formosa)

(2008) Laurence Loewe et al.   BMC EVOLUTIONARY BIOLOGY

Polymorphic MHC loci in an asexual fish, the amazon molly (Poecilia formosa; Poeciliidae)

(2008) HELMUT SCHASCHL et al.   MOLECULAR ECOLOGY

The origin and evolution of a unisexual hybrid: Poecilia formosa

(2008) K.P Lampert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES