Developmental validation of Oxford Nanopore Technology MinION sequence data and the NGSpeciesID bioinformatic pipeline for forensic genetic species identification

NGSpeciesID: DNA barcode and amplicon consensus generation from long‐read sequencing data

(2021) Kristoffer Sahlin et al.   Ecology and Evolution

MinION-Based DNA Barcoding of Preserved and Non-Invasively Collected Wildlife Samples

(2020) Adeline Seah et al.   Genes

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

(2019) Aaron M. Wenger et al.   NATURE BIOTECHNOLOGY

Genetic Biomonitoring and Biodiversity Assessment Using Portable Sequencing Technologies: Current Uses and Future Directions

(2019) Krehenwinkel et al.   Genes

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

A Sequel to Sanger: amplicon sequencing that scales

(2018) Paul D. N. Hebert et al.   BMC GENOMICS

A MinION™-based pipeline for fast and cost-effective DNA barcoding

(2018) Amrita Srivathsan et al.   Molecular Ecology Resources

Single molecule real-time (SMRT) sequencing comes of age: applications and utilities for medical diagnostics

(2018) Simon Ardui et al.   NUCLEIC ACIDS RESEARCH

Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building

(2018) Aaron Pomerantz et al.   GigaScience

Evaluating metabarcoding to analyse diet composition of species foraging in anthropogenic landscapes using Ion Torrent and Illumina sequencing

(2018) Marie-Amélie Forin-Wiart et al.   Scientific Reports

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

(2018) Ryan R. Wick et al.   PLoS Computational Biology

NanoAmpli-Seq: A workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform.

(2018) Szymon T Calus et al.   GigaScience

Species identification in mixed tuna samples with next-generation sequencing targeting two short cytochrome b gene fragments

(2017) Kristina Kappel et al.   FOOD CHEMISTRY

Developmental validation of the MiSeq FGx Forensic Genomics System for Targeted Next Generation Sequencing in Forensic DNA Casework and Database Laboratories

(2017) Anne C. Jäger et al.   Forensic Science International-Genetics

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

Development and validation of a multi-locus DNA metabarcoding method to identify endangered species in complex samples

(2017) Alfred J. Arulandhu et al.   GigaScience

Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments

(2016) Jeff Daily   BMC BIOINFORMATICS

Identification of ungulates used in a traditional Chinese medicine with DNA barcoding technology

(2015) Jing Chen et al.   Ecology and Evolution

Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform

(2015) Shadi Shokralla et al.   Scientific Reports

Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens

(2014) Shadi Shokralla et al.   Molecular Ecology Resources

Deep Sequencing of Plant and Animal DNA Contained within Traditional Chinese Medicines Reveals Legality Issues and Health Safety Concerns

(2012) Megan L. Coghlan et al.   PLoS Genetics

The occurrence of mtDNA heteroplasmy in multiple cetacean species

(2011) Nicole L. Vollmer et al.   CURRENT GENETICS

Field guide to next-generation DNA sequencers

(2011) TRAVIS C. GLENN   Molecular Ecology Resources

Current issues in species identification for forensic science and the validity of using the cytochrome oxidase I (COI) gene

(2010) Linzi Wilson-Wilde et al.   Forensic Science Medicine and Pathology

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

Wildlife DNA forensics—bridging the gap between conservation genetics and law enforcement

(2008) R Ogden et al.   Endangered Species Research