Evolution, expression and functional analysis of cultivated allotetraploid cotton DIR genes

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Genome-Wide Identification and Characterization of DIR Genes in Medicago truncatula

(2019) Min Song et al.   BIOCHEMICAL GENETICS

Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton

(2019) Yan Hu et al.   NATURE GENETICS

SignalP 5.0 improves signal peptide predictions using deep neural networks

(2019) José Juan Almagro Armenteros et al.   NATURE BIOTECHNOLOGY

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Extensive intraspecific gene order and gene structural variations in upland cotton cultivars

(2019) Zhaoen Yang et al.   Nature Communications

GhbHLH18 negatively regulates fiber strength and length by enhancing lignin biosynthesis in cotton fibers

(2019) Zhengyin Gao et al.   PLANT SCIENCE

CDD/SPARCLE: the conserved domain database in 2020

(2019) Shennan Lu et al.   NUCLEIC ACIDS RESEARCH

Reactive Oxygen Species in Plant Signaling

(2018) Cezary Waszczak et al.   Annual Review of Plant Biology

Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield

(2018) Zhiying Ma et al.   NATURE GENETICS

Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits

(2018) Xiongming Du et al.   NATURE GENETICS

A genome-wide analysis of the flax (Linum usitatissimum L.) dirigent protein family: from gene identification and evolution to differential regulation

(2018) Cyrielle Corbin et al.   PLANT MOLECULAR BIOLOGY

Genome-wide analysis of dirigent gene family in pepper (Capsicum annuum L.) and characterization of CaDIR7 in biotic and abiotic stresses

(2018) Abid Khan et al.   Scientific Reports

Genetic Map Construction and Fiber Quality QTL Mapping Using the CottonSNP80K Array in Upland Cotton

(2018) Zhaoyun Tan et al.   Frontiers in Plant Science

Molecular Characterization, Evolution, and Expression Profiling of the Dirigent (DIR) Family Genes in Chinese White Pear (Pyrus bretschneideri)

(2018) Xi Cheng et al.   Frontiers in Genetics

HyPRP1 performs a role in negatively regulating cotton resistance to V. dahliae via the thickening of cell walls and ROS accumulation

(2018) Jun Yang et al.   BMC PLANT BIOLOGY

Dirigent proteins in plants: modulating cell wall metabolism during abiotic and biotic stress exposure

(2017) Candelas Paniagua et al.   JOURNAL OF EXPERIMENTAL BOTANY

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

(2017) Aziz Khan et al.   NUCLEIC ACIDS RESEARCH

The Missing Link in Leguminous Pterocarpan Biosynthesis is a Dirigent Domain-Containing Protein with Isoflavanol Dehydratase Activity

(2017) Kai Uchida et al.   PLANT AND CELL PHYSIOLOGY

A Novel Soybean Dirigent Gene GmDIR22 Contributes to Promotion of Lignan Biosynthesis and Enhances Resistance to Phytophthora sojae

(2017) Ninghui Li et al.   Frontiers in Plant Science

Expression in Pichia pastoris and characterization of two novel dirigent proteins for atropselective formation of gossypol

(2016) Isabelle Effenberger et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

(2016) Muhammad Jamshed et al.   BMC GENOMICS

Genome-wide analysis and environmental response profiling of dirigent family genes in rice (Oryza sativa)

(2016) Yongrong Liao et al.   Genes & Genomics

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic Analysis and QTL Detection on Fiber Traits Using Two Recombinant Inbred Lines and Their Backcross Populations in Upland Cotton

(2016) Lianguang Shang et al.   G3-Genes Genomes Genetics

Dirigent Proteins from Cotton (Gossypiumsp.) for the Atropselective Synthesis of Gossypol

(2015) Isabelle Effenberger et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Dirigent Protein-Mediated Lignan and Cyanogenic Glucoside Formation in Flax Seed: Integrated Omics and MALDI Mass Spectrometry Imaging

(2015) Doralyn S. Dalisay et al.   JOURNAL OF NATURAL PRODUCTS

Re-evaluating the phylogeny of allopolyploid Gossypium L.

(2015) Corrinne E. Grover et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis

(2015) Qiao Zhao et al.   PHYTOCHEMISTRY

Non-host disease resistance response in pea ( Pisum sativum ) pods: Biochemical function of DRR206 and phytoalexin pathway localization

(2015) Herana Kamal Seneviratne et al.   PHYTOCHEMISTRY

Construction of genetic map and QTL analysis of fiber quality traits for Upland cotton (Gossypium hirsutum L.)

(2014) Shiyi Tang et al.   EUPHYTICA

Genetic map and QTL controlling fiber quality traits in upland cotton (Gossypium hirsutum L.)

(2014) Zhaoyun Tan et al.   EUPHYTICA

The calcium sensor GhCaM7 promotes cotton fiber elongation by modulating reactive oxygen species (ROS) production

(2014) Wenxin Tang et al.   NEW PHYTOLOGIST

Phenylcoumaran Benzylic Ether Reductase Prevents Accumulation of Compounds Formed under Oxidative Conditions in Poplar Xylem

(2014) C. Niculaes et al.   PLANT CELL

The Arabidopsis thaliana hypocotyl, a model to identify and study control mechanisms of cellular expansion

(2014) Agnieszka Karolina Boron et al.   PLANT CELL REPORTS

Molecular basis of a shattering resistance boosting global dissemination of soybean

(2014) Hideyuki Funatsuki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

miR828 and miR858 regulate homoeologous MYB2 gene functions in Arabidopsis trichome and cotton fibre development

(2014) Xueying Guan et al.   Nature Communications

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Dual Functions of WLIM1a in Cell Elongation and Secondary Wall Formation in Developing Cotton Fibers

(2013) L.-B. Han et al.   PLANT CELL

A Genetic and Metabolic Analysis Revealed that Cotton Fiber Cell Development Was Retarded by Flavonoid Naringenin

(2013) J. Tan et al.   PLANT PHYSIOLOGY

Characterization and expression analysis of dirigent family genes related to stresses in Brassica

(2013) Senthil Kumar Thamil Arasan et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Dirigent domain-containing protein is part of the machinery required for formation of the lignin-based Casparian strip in the root

(2013) P. S. Hosmani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Overexpression of cotton (Gossypium hirsutum) dirigent1 gene enhances lignification that blocks the spread of Verticillium dahliae

(2012) Haiyan Shi et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments

(2012) Zhang Zhang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Opposite Stereoselectivities of Dirigent Proteins inArabidopsisandSchizandraSpecies

(2012) Kye-Won Kim et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

The draft genome of a diploid cotton Gossypium raimondii

(2012) Kunbo Wang et al.   NATURE GENETICS

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Proteomic analysis of the sea-island cotton roots infected by wilt pathogen Verticillium dahliae

(2011) Fu-Xin Wang et al.   PROTEOMICS

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

The genome of Theobroma cacao

(2010) Xavier Argout et al.   NATURE GENETICS

YLoc—an interpretable web server for predicting subcellular localization

(2010) Sebastian Briesemeister et al.   NUCLEIC ACIDS RESEARCH

Molecular and Biochemical Evidence for Phenylpropanoid Synthesis and Presence of Wall-linked Phenolics in Cotton Fibers

(2009) Ling Fan et al.   Journal of Integrative Plant Biology

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Importance of Lineage-Specific Expansion of Plant Tandem Duplicates in the Adaptive Response to Environmental Stimuli

(2008) K. Hanada et al.   PLANT PHYSIOLOGY

The Evolution of Spinnable Cotton Fiber Entailed Prolonged Development and a Novel Metabolism

(2008) Ran Hovav et al.   PLoS Genetics