Modeling multiple phenotypes in wheat using data‐driven genomic exploratory factor analysis and Bayesian network learning

Deciphering Cattle Temperament Measures Derived From a Four-Platform Standing Scale Using Genetic Factor Analytic Modeling

(2020) Haipeng Yu et al.   Frontiers in Genetics

A Multiple-Trait Bayesian Variable Selection Regression Method for Integrating Phenotypic Causal Networks in Genome-Wide Association Studies

(2020) Zigui Wang et al.   G3-Genes Genomes Genetics

Genome-Wide Association Study for Multiple Biotic Stress Resistance in Synthetic Hexaploid Wheat

(2019) Madhav Bhatta et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Study on stripe rust (Puccinia striiformis) effect on grain filling and seed morphology building of special winter wheat germplasm Huixianhong

(2019) Chunyu He et al.   PLoS One

Utilizing trait networks and structural equation models as tools to interpret multi-trait genome-wide association studies

(2019) Mehdi Momen et al.   Plant Methods

Who learns better Bayesian network structures: Accuracy and speed of structure learning algorithms

(2019) Marco Scutari et al.   INTERNATIONAL JOURNAL OF APPROXIMATE REASONING

blavaan: Bayesian Structural Equation Models via Parameter Expansion

(2018) Edgar C. Merkle et al.   Journal of Statistical Software

Unlocking the novel genetic diversity and population structure of synthetic Hexaploid wheat

(2018) Madhav Bhatta et al.   BMC GENOMICS

Rice grain Fe, Mn and Zn accumulation: How important are flag leaves and seed number?  

(2018) Sperotto RA et al.   PLANT SOIL AND ENVIRONMENT

Genome-wide association study reveals favorable alleles associated with common bunt resistance in synthetic hexaploid wheat

(2018) Madhav Bhatta et al.   EUPHYTICA

Genome-Wide Association Study Reveals Novel Genomic Regions for Grain Yield and Yield-Related Traits in Drought-Stressed Synthetic Hexaploid Wheat

(2018) Madhav Bhatta et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-Wide Association Study Reveals Novel Genomic Regions Associated with 10 Grain Minerals in Synthetic Hexaploid Wheat

(2018) Madhav Bhatta et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Including Phenotypic Causal Networks in Genome-Wide Association Studies Using Mixed Effects Structural Equation Models

(2018) Mehdi Momen et al.   Frontiers in Genetics

Multitrait index based on factor analysis and ideotype-design: proposal and application on elephant grass breeding for bioenergy

(2017) João Romero do Amaral Santos de Car Rocha et al.   Global Change Biology Bioenergy

High-yielding winter synthetic hexaploid wheats resistant to multiple diseases and pests

(2017) Alexey Morgounov et al.   Plant Genetic Resources-Characterization and Utilization

Genotyping-by-Sequencing Derived High-Density Linkage Map and its Application to QTL Mapping of Flag Leaf Traits in Bread Wheat

(2017) Waseem Hussain et al.   Scientific Reports

High-Throughput Phenotyping of Sorghum Plant Height Using an Unmanned Aerial Vehicle and Its Application to Genomic Prediction Modeling

(2017) Kakeru Watanabe et al.   Frontiers in Plant Science

High-yielding winter synthetic hexaploid wheats resistant to multiple diseases and pests

(2017) Alexey Morgounov et al.   Plant Genetic Resources-Characterization and Utilization

Variation for Grain Mineral Concentration in a Diversity Panel of Current and Historical Great Plains Hard Winter Wheat Germplasm

(2015) Mary J. Guttieri et al.   CROP SCIENCE

The Causal Meaning of Genomic Predictors and How It Affects Construction and Comparison of Genome-Enabled Selection Models

(2015) Bruno D. Valente et al.   GENETICS

Searching for causal networks involving latent variables in complex traits: Application to growth, carcass, and meat quality traits in pigs1

(2015) F. Peñagaricano et al.   JOURNAL OF ANIMAL SCIENCE

The Causal Meaning of Genomic Predictors and How It Affects Construction and Comparison of Genome-Enabled Selection Models

(2015) Bruno D. Valente et al.   GENETICS

Dissecting High-Dimensional Phenotypes with Bayesian Sparse Factor Analysis of Genetic Covariance Matrices

(2013) D. E. Runcie et al.   GENETICS

Field high-throughput phenotyping: the new crop breeding frontier

(2013) José Luis Araus et al.   TRENDS IN PLANT SCIENCE

Characterization of Quantitative Trait Loci for Grain Minerals in Hexaploid Wheat (Triticum aestivum L.)

(2013) Rong-li SHI et al.   Journal of Integrative Agriculture

Searching for Recursive Causal Structures in Multivariate Quantitative Genetics Mixed Models

(2010) B. D. Valente et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE