Factors Influencing Genomic Prediction Accuracies of Tropical Maize Resistance to Fall Armyworm and Weevils

Genetic Basis of Maize Resistance to Multiple Insect Pests: Integrated Genome-Wide Comparative Mapping and Candidate Gene Prioritization

(2020) A. Badji et al.   Genes

Factors Affecting the Accuracy of Genomic Selection for Agricultural Economic Traits in Maize, Cattle, and Pig Populations

(2019) Haohao Zhang et al.   Frontiers in Genetics

Design of training populations for selective phenotyping in genomic prediction

(2019) Deniz Akdemir et al.   Scientific Reports

Training population selection and use of fixed effects to optimize genomic predictions in a historical USA winter wheat panel

(2019) J. Martin Sarinelli et al.   THEORETICAL AND APPLIED GENETICS

Training set optimization of genomic prediction by means of EthAcc

(2019) Brigitte Mangin et al.   PLoS One

Genomic Selection in Cereal Breeding

(2019) Charlotte Robertsen et al.   Agronomy-Basel

Genetic architecture of maize chlorotic mottle virus and maize lethal necrosis through GWAS, linkage analysis and genomic prediction in tropical maize germplasm

(2019) Chelang’at Sitonik et al.   THEORETICAL AND APPLIED GENETICS

Training set determination for genomic selection

(2019) Jen-Hsiang Ou et al.   THEORETICAL AND APPLIED GENETICS

Benchmarking Parametric and Machine Learning Models for Genomic Prediction of Complex Traits

(2019) Christina B. Azodi et al.   G3-Genes Genomes Genetics

Cassava yield traits predicted by genomic selection methods

(2019) Luciano Rogério Braatz de Andrade et al.   PLoS One

An Integrated Molecular and Conventional Breeding Scheme for Enhancing Genetic Gain in Maize in Africa

(2019) Melaku Gedil et al.   Frontiers in Plant Science

Genome-Wide Analyses and Prediction of Resistance to MLN in Large Tropical Maize Germplasm

(2019) Christine Nyaga et al.   Genes

Impact of Phenotypic Correction Method and Missing Phenotypic Data on Genomic Prediction of Maize Hybrids

(2018) Giovanni Galli et al.   CROP SCIENCE

Efficiency of genomic prediction across two Eucalyptus nitens seed orchards with different selection histories

(2018) Mari Suontama et al.   HEREDITY

Genomic-Enabled Prediction Kernel Models with Random Intercepts for Multi-environment Trials

(2018) Jaime Cuevas et al.   G3-Genes Genomes Genetics

Genomic Prediction Accounting for Genotype by Environment Interaction Offers an Effective Framework for Breeding Simultaneously for Adaptation to an Abiotic Stress and Performance Under Normal Cropping Conditions in Rice

(2018) Manel Ben Hassen et al.   G3-Genes Genomes Genetics

Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea

(2018) Manish Roorkiwal et al.   Scientific Reports

Accelerating crop genetic gains with genomic selection

(2018) Kai Peter Voss-Fels et al.   THEORETICAL AND APPLIED GENETICS

A Benchmarking Between Deep Learning, Support Vector Machine and Bayesian Threshold Best Linear Unbiased Prediction for Predicting Ordinal Traits in Plant Breeding

(2018) Osval A. Montesinos-López et al.   G3-Genes Genomes Genetics

Optimizing Genomic Selection for a Sorghum Breeding Program in Haiti: A Simulation Study

(2018) Kebede T. Muleta et al.   G3-Genes Genomes Genetics

Phenotypic Selection in Ornamental Breeding: It's Better to Have the BLUPs Than to Have the BLUEs

(2018) Heike Molenaar et al.   Frontiers in Plant Science

Genomic prediction unifies animal and plant breeding programs to form platforms for biological discovery

(2017) John M Hickey et al.   NATURE GENETICS

Genomic Selection in Plant Breeding: Methods, Models, and Perspectives

(2017) José Crossa et al.   TRENDS IN PLANT SCIENCE

Rapid Cycling Genomic Selection in a Multiparental Tropical Maize Population

(2017) Xuecai Zhang et al.   G3-Genes Genomes Genetics

Use of Genomic Estimated Breeding Values Results in Rapid Genetic Gains for Drought Tolerance in Maize

(2017) B.S. Vivek et al.   Plant Genome

The Promise of Agriculture Genomics

(2017) Wenqin Wang et al.   International Journal of Genomics

Optimizing Training Population Size and Genotyping Strategy for Genomic Prediction Using Association Study Results and Pedigree Information. A Case of Study in Advanced Wheat Breeding Lines

(2017) Fabio Cericola et al.   PLoS One

Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer

(2016) Giovanny Covarrubias-Pazaran   PLoS One

First Report of Outbreaks of the Fall Armyworm Spodoptera frugiperda (J E Smith) (Lepidoptera, Noctuidae), a New Alien Invasive Pest in West and Central Africa

(2016) Georg Goergen et al.   PLoS One

Relative Efficiency of Genomewide Selection for Testcross Performance of Doubled Haploid Lines in a Maize Breeding Program

(2015) Lisa-Marie Krchov et al.   CROP SCIENCE

Genetic Gains in Grain Yield Through Genomic Selection in Eight Bi-parental Maize Populations under Drought Stress

(2015) Yoseph Beyene et al.   CROP SCIENCE

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Improving resistance to the European corn borer: a comprehensive study in elite maize using QTL mapping and genome-wide prediction

(2015) Flavio Foiada et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association and genomic prediction of resistance to maize lethal necrosis disease in tropical maize germplasm

(2015) Manje Gowda et al.   THEORETICAL AND APPLIED GENETICS

Genomic Selection for Predicting Head Blight Resistance in a Wheat Breeding Program

(2015) Marcio P. Arruda et al.   Plant Genome

Evaluation of Genomic Selection Training Population Designs and Genotyping Strategies in Plant Breeding Programs Using Simulation

(2014) John M. Hickey et al.   CROP SCIENCE

Genome-Wide Regression and Prediction with the BGLR Statistical Package

(2014) P. Perez et al.   GENETICS

Training set optimization under population structure in genomic selection

(2014) Julio Isidro et al.   THEORETICAL AND APPLIED GENETICS

Parametric and Nonparametric Statistical Methods for Genomic Selection of Traits with Additive and Epistatic Genetic Architectures

(2014) Réka Howard et al.   G3-Genes Genomes Genetics

Genomic prediction in CIMMYT maize and wheat breeding programs

(2013) J Crossa et al.   HEREDITY

The Genetic Architecture of Maize Stalk Strength

(2013) Jason A. Peiffer et al.   PLoS One

Genomic Prediction in Maize Breeding Populations with Genotyping-by-Sequencing

(2013) José Crossa et al.   G3-Genes Genomes Genetics

Polygenic Modeling with Bayesian Sparse Linear Mixed Models

(2013) Xiang Zhou et al.   PLoS Genetics

Comparison of whole-genome prediction models for traits with contrasting genetic architecture in a diversity panel of maize inbred lines

(2012) Christian Riedelsheimer et al.   BMC GENOMICS

Potential and Optimization of Genomic Selection for Fusarium Head Blight Resistance in Six-Row Barley

(2012) A. J. Lorenz et al.   CROP SCIENCE

Genomewide Selection versus Marker-assisted Recurrent Selection to Improve Grain Yield and Stover-quality Traits for Cellulosic Ethanol in Maize

(2012) Jon M. Massman et al.   CROP SCIENCE

Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding

(2012) G. de los Campos et al.   GENETICS

Random forests for genomic data analysis

(2012) Xi Chen et al.   GENOMICS

Application of multiple shrinkage methods to genomic predictions1

(2012) Christian Maltecca et al.   JOURNAL OF ANIMAL SCIENCE

Comparison Between Linear and Non-parametric Regression Models for Genome-Enabled Prediction in Wheat

(2012) Paulino Pérez-Rodríguez et al.   G3-Genes Genomes Genetics

MissForest--non-parametric missing value imputation for mixed-type data

(2011) D. J. Stekhoven et al.   BIOINFORMATICS

Extension of the bayesian alphabet for genomic selection

(2011) David Habier et al.   BMC BIOINFORMATICS

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Genomic Selection in Plant Breeding: A Comparison of Models

(2011) Nicolas Heslot et al.   CROP SCIENCE

Genome-based prediction of testcross values in maize

(2011) Theresa Albrecht et al.   THEORETICAL AND APPLIED GENETICS

Crops that feed the world 6. Past successes and future challenges to the role played by maize in global food security

(2011) Bekele Shiferaw et al.   Food Security

Accuracy and Training Population Design for Genomic Selection on Quantitative Traits in Elite North American Oats

(2011) Franco G. Asoro et al.   Plant Genome

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

EM algorithm for Bayesian estimation of genomic breeding values

(2010) Takeshi Hayashi et al.   BMC GENETICS

Genomic-Enabled Prediction Based on Molecular Markers and Pedigree Using the Bayesian Linear Regression Package in R

(2010) Paulino Pérez et al.   Plant Genome

Predicting Quantitative Traits With Regression Models for Dense Molecular Markers and Pedigree

(2009) G. de los Campos et al.   GENETICS

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

The Bayesian Lasso

(2008) Trevor Park et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION